1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcatattggcagcagaagatcctggagaggccggagagatccagtgggcttgctctgaattctgactccgacacctgctcgctttcctgtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG
species | Chlamydomonas reinhardtii |
transcript | EDP09628 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|14227543|gb|BG846359.1|BG846359
genomic: CTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|161810931|gb|FC099684.1|FC099684
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|161802502|gb|FC091026.1|FC091026
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|15693543|gb|BI717848.1|BI717848
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|15369875|gb|BI529301.1|BI529301
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|15373302|gb|BI532728.1|BI532728
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|161815581|gb|FC101800.1|FC101800
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|161790768|gb|FC079471.1|FC079471
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|8828156|gb|BE211790.1|BE211790
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCA-CEST: gi|16430905|gb|BI996131.1|BI996131
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|10126670|gb|BE725390.1|BE725390
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|161819382|gb|FC109380.1|FC109380
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|161797004|gb|FC087091.1|FC087091
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|8286635|gb|BE024194.1|BE024194
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|161802748|gb|FC092455.1|FC092455
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|7709492|gb|AW772910.1|AW772910
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|23362806|gb|BU650626.1|BU650626
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|15372656|gb|BI532082.1|BI532082
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|14225592|gb|BG844408.1|BG844408
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|8932862|gb|BE227623.1|BE227623
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|161794759|gb|FC077357.1|FC077357
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|161812718|gb|FC094270.1|FC094270
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|15370493|gb|BI529919.1|BI529919
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|161797930|gb|FC087419.1|FC087419
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|161801979|gb|FC088800.1|FC088800
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAACEST: gi|23366045|gb|BU653865.1|BU653865
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|15697973|gb|BI722278.1|BI722278
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACEST: gi|49459525|gb|BP087438.1|BP087438
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
gtgggcttgctctgaattctgactccgacacctgctcgctttcctgtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG
ttctgac putative branch site (score: 2)
ctttcctgt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatattggcagcagaagatcctggagaggccggagagatccagtgggcttgctctgaattctgactccgacacctgctcgctttcctgtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG
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