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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttaaagcacaatcgggcgcgcctttctgtccgcgcgggctgaccagcttcgtgtggactgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP09628
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7687461|gb|AW758107.1|AW758107
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|14227543|gb|BG846359.1|BG846359
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161810931|gb|FC099684.1|FC099684
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161802502|gb|FC091026.1|FC091026
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|15693543|gb|BI717848.1|BI717848
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|15369875|gb|BI529301.1|BI529301
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|15373302|gb|BI532728.1|BI532728
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161815581|gb|FC101800.1|FC101800
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161790768|gb|FC079471.1|FC079471
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|8828156|gb|BE211790.1|BE211790
EST:     A-CTGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGGGACGTTTGGCGATGCTA
genomic: AAC-GTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|16430905|gb|BI996131.1|BI996131
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|10126670|gb|BE725390.1|BE725390
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161819382|gb|FC109380.1|FC109380
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161797004|gb|FC087091.1|FC087091
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|8286635|gb|BE024194.1|BE024194
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161802748|gb|FC092455.1|FC092455
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|7709492|gb|AW772910.1|AW772910
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|23362806|gb|BU650626.1|BU650626
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|15372656|gb|BI532082.1|BI532082
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|14225592|gb|BG844408.1|BG844408
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|8932862|gb|BE227623.1|BE227623
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161794759|gb|FC077357.1|FC077357
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161812718|gb|FC094270.1|FC094270
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|15370493|gb|BI529919.1|BI529919
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161797930|gb|FC087419.1|FC087419
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|161801979|gb|FC088800.1|FC088800
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|23366045|gb|BU653865.1|BU653865
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|15697973|gb|BI722278.1|BI722278
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTA
EST: gi|49459525|gb|BP087438.1|BP087438
EST:     CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACG                         GTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACG
genomic: CAACGTCATCGAGCCCCTGTCCGCGTCCTCGCTGGAGTGCCTTGCAAACGgtaggttaaa ... ctgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgggcgcgcctttctgtccgcgcgggctgaccagcttcgtgtggactgcctgcagGTGCACGTACCTCTTACAAGACCGTGACGGGCGTGACGTTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA
                        ggctgac  putative branch site (score: 3)