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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggcccatgatgcccgcgcaacaccccactacgaacccccatccaacctcctaatccccatccctcccccatccaaccccacctacgcgaaccaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCGCACCTGGTCGCGCTCACACGCGCAGGACAACCTTATGGACATTGTGCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09628
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7687461|gb|AW758107.1|AW758107
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|14227543|gb|BG846359.1|BG846359
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|161810931|gb|FC099684.1|FC099684
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|161802502|gb|FC091026.1|FC091026
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|15693543|gb|BI717848.1|BI717848
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|15369875|gb|BI529301.1|BI529301
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|15373302|gb|BI532728.1|BI532728
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|161815581|gb|FC101800.1|FC101800
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|161790768|gb|FC079471.1|FC079471
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|16430905|gb|BI996131.1|BI996131
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|10126670|gb|BE725390.1|BE725390
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGTCCGAGGCATTCCA                         GCTAGCGCCCTTCTGCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCG
EST: gi|161819382|gb|FC109380.1|FC109380
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|161797004|gb|FC087091.1|FC087091
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|8286635|gb|BE024194.1|BE024194
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|161802748|gb|FC092455.1|FC092455
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|7709492|gb|AW772910.1|AW772910
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|23362806|gb|BU650626.1|BU650626
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|15372656|gb|BI532082.1|BI532082
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|14225592|gb|BG844408.1|BG844408
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|8932862|gb|BE227623.1|BE227623
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCT
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCT
EST: gi|161794759|gb|FC077357.1|FC077357
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|161812718|gb|FC094270.1|FC094270
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|15370493|gb|BI529919.1|BI529919
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|161797930|gb|FC087419.1|FC087419
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|161801979|gb|FC088800.1|FC088800
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCTGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|23366045|gb|BU653865.1|BU653865
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
EST: gi|15697973|gb|BI722278.1|BI722278
EST:     TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCA                         GCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG
genomic: TTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCATTCCAgtgagtgcct ... accaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctcctaatccccatccctcccccatccaaccccacctacgcgaaccaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCGCACCTGGTCGCGCTCACACGCGCAGGACAACCTTATGGACATTGTGCCG
   tcctaat  putative branch site (score: 2)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cggcccatgatgcccgcgcaacaccccactacgaacccccatccaacctcctaatccccatccctcccccatccaaccccacctacgcgaaccaacccagGCAAGCGCCCTTCTGCGAGAACTTCGAGTTCCGCTTGGAGGCCGCTGGCCGCACCTGGTCGCGCTCACACGCGCAGGACAACCTTATGGACATTGTGCCG

- - - - - - - - - - acacccc
- - - - - - - - - - - - - - -tacgaac
- - - - - - - - - - - - - - - - - - - -catccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacccca