Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGCCTCTTCCGCGCGTCGGTGCGTGCGACCATCTCGGGTCACCGTCCGCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatattggcagcagaagatcctggagaggccggagagatccagtgggcttgctctgaattctgactccgacacctgctcgctttcctgtgctcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09628
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7687461|gb|AW758107.1|AW758107
EST:     CTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: CTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|14227543|gb|BG846359.1|BG846359
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161810931|gb|FC099684.1|FC099684
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161802502|gb|FC091026.1|FC091026
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|15693543|gb|BI717848.1|BI717848
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|15369875|gb|BI529301.1|BI529301
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|15373302|gb|BI532728.1|BI532728
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161815581|gb|FC101800.1|FC101800
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161790768|gb|FC079471.1|FC079471
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|8828156|gb|BE211790.1|BE211790
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCA-C
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|16430905|gb|BI996131.1|BI996131
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|10126670|gb|BE725390.1|BE725390
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161819382|gb|FC109380.1|FC109380
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161797004|gb|FC087091.1|FC087091
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|8286635|gb|BE024194.1|BE024194
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161802748|gb|FC092455.1|FC092455
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|7709492|gb|AW772910.1|AW772910
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|23362806|gb|BU650626.1|BU650626
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|15372656|gb|BI532082.1|BI532082
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|14225592|gb|BG844408.1|BG844408
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|8932862|gb|BE227623.1|BE227623
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161794759|gb|FC077357.1|FC077357
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161812718|gb|FC094270.1|FC094270
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|15370493|gb|BI529919.1|BI529919
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161797930|gb|FC087419.1|FC087419
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|161801979|gb|FC088800.1|FC088800
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGTAGCAATGGTCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|23366045|gb|BU653865.1|BU653865
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|15697973|gb|BI722278.1|BI722278
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
EST: gi|49459525|gb|BP087438.1|BP087438
EST:     GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTG                         GGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC
genomic: GCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatat ... gtgctcgcagGGCCTGGCGCAGTGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCCGCCTCTTCCGCGCGTCGGTGCGTGCGACCATCTCGGGTCACCGTCCGCGCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGgtaagcatattggcagcagaagatcctggagaggccggagagatccagtgggcttgctctgaattctgactccgacacctgctcgctttcctgtgctcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG