1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acgcaccagtcagcacctcgcggcacccccctgcacctgatccttcgccccgcatcaccagccaacaccattccacccctccacgctgtgccccgcacagGCGGCGTGTACATCGCCGGCGGCATCACGCCCAAGCTGCTGCCGCGCGTCAAGGCCGGCTCACTGCTGGAGGGCTTCCTCATGCGCGCAGGCCGCGAGCC
species | Chlamydomonas reinhardtii |
transcript | EDP09343 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATCGTGGGCGCCGAGGCGGGAGCCATGGCGCTCCGGTGCCTGGCAAAAG GCGGCGTGTACATCGCCGGCGGCATCACGCCCAAGCTGCTGCCGCGCGTCAEST: gi|15373010|gb|BI532436.1|BI532436
genomic: CATCGTGGGCGCCGAGGCGGGAGCCATGGCGCTCCGGTGCCTGGCAAAAGgtgggtgctg ... ccccgcacagGCGGCGTGTACATCGCCGGCGGCATCACGCCCAAGCTGCTGCCGCGCGTCA
EST: CATCGTGGGCGCCGAGGCGGGAGCCATGGCGCTCCGGTGCCTGGCAAAAG GCGGCGTGTACATCGCCGGCGGCATCACGCCCAAACTGCTGCCGCGCGTCAEST: gi|16438522|gb|BM003742.1|BM003742
genomic: CATCGTGGGCGCCGAGGCGGGAGCCATGGCGCTCCGGTGCCTGGCAAAAGgtgggtgctg ... ccccgcacagGCGGCGTGTACATCGCCGGCGGCATCACGCCCAAGCTGCTGCCGCGCGTCA
EST: CATCGTGGGCGCCGAGGCGGGAGCCATGGCGCTCCGGTGCCTGGCAAAAG GCGGCGTGTACATCGCCGGCGGCATCACGCCCAAGCTGCTGCCGCGCGTCA
genomic: CATCGTGGGCGCCGAGGCGGGAGCCATGGCGCTCCGGTGCCTGGCAAAAGgtgggtgctg ... ccccgcacagGCGGCGTGTACATCGCCGGCGGCATCACGCCCAAGCTGCTGCCGCGCGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgcaccagtcagcacctcgcggcacccccctgcacctgatccttcgccccgcatcaccagccaacaccattccacccctccacgctgtgccccgcacagGCGGCGTGTACATCGCCGGCGGCATCACGCCCAAGCTGCTGCCGCGCGTCAAGGCCGGCTCACTGCTGGAGGGCTTCCTCATGCGCGCAGGCCGCGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
acgcacc
- - - - - - - - - - - - - - -cctgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccaaca