1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcacgcgtgttgggggcccaggatgggcaggttatgcgagcacaccatggtgctgacggcgaggggccgctgctggactgaccggcttgttgccgcgcagGCGAGGGCGCACACGCCACGTTCGCTCCGCGCGGATGGAAGCAGAAGGCTTTGGCGCGCTTTGTGACGACGCGCAGCGGGCACTGCGAGATTGAGGAG
species | Chlamydomonas reinhardtii |
transcript | EDP09343 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCGCAGCTGATGTGGGACACGGGACTGAACGCGTACAAGGTCTGGCCAG GCGAGGGCGCACACGCCACGTTCGCTCCGCGCGGATGGAAGCAGAAGGCTTEST: gi|15373011|gb|BI532437.1|BI532437
genomic: GGCGCAGCTGATGTGGGACACGGGACTGAACGCGTACAAGGTCTGGCCAGgtgcgttgtg ... tgccgcgcagGCGAGGGCGCACACGCCACGTTCGCTCCGCGCGGATGGAAGCAGAAGGCTT
EST: GGCGCAGCTGATGTGGGACACGGGACTGAACGCGTACAAGGTCTGGCCAG GCGAGGGCGCACACGCCACGTTCGCTCCGCGCGGATGGAAGCAGAAGGCTTEST: gi|14232529|gb|BG851345.1|BG851345
genomic: GGCGCAGCTGATGTGGGACACGGGACTGAACGCGTACAAGGTCTGGCCAGgtgcgttgtg ... tgccgcgcagGCGAGGGCGCACACGCCACGTTCGCTCCGCGCGGATGGAAGCAGAAGGCTT
EST: GGCGCAGCTGATGTGGGACACGGGACTGAACGCGTACAAGGTCTGGCCAG GCGAGGGCGCACACGCCACGTTCGCTTCGCGCGGATGGAAGCAGAAGGCTT
genomic: GGCGCAGCTGATGTGGGACACGGGACTGAACGCGTACAAGGTCTGGCCAGgtgcgttgtg ... tgccgcgcagGCGAGGGCGCACACGCCACGTTCGCTCCGCGCGGATGGAAGCAGAAGGCTT
catggtgctgacggcgaggggccgctgctggactgaccggcttgttgccgcgcagGCGAGGGCGCACACGCCACGTTCGCTCCGCGCGGATGGAAGCAGAAGGCTTTGGCGCGCTTTGTGACGACGCGCAGCGGGCACTGCGAGATTGAGGAG
gactgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacgcgtgttgggggcccaggatgggcaggttatgcgagcacaccatggtgctgacggcgaggggccgctgctggactgaccggcttgttgccgcgcagGCGAGGGCGCACACGCCACGTTCGCTCCGCGCGGATGGAAGCAGAAGGCTTTGGCGCGCTTTGTGACGACGCGCAGCGGGCACTGCGAGATTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
gcacgcg
- - - - - - - - - - - - - - - - - - - - -acaccat