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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTGCTGGCGCCGTCAGCGCCAACAAGTGCCTGATGACCAACGTAGAGCACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCGgtgagaggccgcatgtatccagaggggttggggcgggcgcgcgtgaaacgcagggccagcatagccccgttgtggtgctatggcctcatcggggttgcctgccatgccgggaagccgcagcaaaactcttgcttccgggtgtgccgtaaactggccgtggttatggccccggctggctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09343
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16438523|gb|BM003743.1|BM003743
EST:     CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCG                         GGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGGCATTCCGGTGCT
genomic: CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCGgtgagaggcc ... ctggctgcagGGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGGCATTCCGGTGCT
EST: gi|14233510|gb|BG852326.1|BG852326
EST:     CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCG                         GGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGGCATTCCGGTGCT
genomic: CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCGgtgagaggcc ... ctggctgcagGGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGGCATTCCGGTGCT
EST: gi|10771456|gb|AV622279.1|AV622279
EST:     CACTGGCCCATCATCGATGGTGATGACATCCAAGCGCGGCACGGTTTCCG                         GGTTGCGCTGCTGAATGACTTCGAGGCGGTGGGCTACGG
genomic: CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCGgtgagaggcc ... ctggctgcagGGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGG
EST: gi|15368356|gb|BI527782.1|BI527782
EST:     CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCG                         GGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGGCATTCCGGTGCT
genomic: CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCGgtgagaggcc ... ctggctgcagGGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGGCATTCCGGTGCT
EST: gi|22055102|gb|BQ811679.1|BQ811679
EST:     CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCG                         GGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTTACGGCATTCCGGTGC
genomic: CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCGgtgagaggcc ... ctggctgcagGGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCT-ACGGCATTCCGGTGC
EST: gi|15373011|gb|BI532437.1|BI532437
EST:     CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCG                         GGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGGCATTCCGGTGCT
genomic: CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCGgtgagaggcc ... ctggctgcagGGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGGCATTCCGGTGCT
EST: gi|14232529|gb|BG851345.1|BG851345
EST:     CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCG                         GGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGGCATTCCGGTGCT
genomic: CACTGGCCCATCATCGACGGTGATGACATCCAAGCGCGGCACGGTTTCCGgtgagaggcc ... ctggctgcagGGTTGCACTGCTGAACGACTTTGAGGCGGTGGGCTACGGCATTCCGGTGCT