1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gagcgggaggaaggggctctaggctaacgaccgggagggctatctcaattgtggcgccgtgtgtcctgtcacgcacctgcgccggcgcctgcgaggacagGCGCCCAAGGTGGTGATGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCTGATGTGGGACACGGGACTGAACGCGTACAAGGTCTGGCCAG
species | Chlamydomonas reinhardtii |
transcript | EDP09343 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGCCCGCACGACGTGGTGCCGCTCAACGACGTGCCCGTGCAGCCCAAG GCGCCCAAGGTGGTGATGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCTGEST: gi|14233510|gb|BG852326.1|BG852326
genomic: TGGGCCCGCACGACGTGGTGCCGCTCAACGACGTGCCCGTGCAGCCCAAGgtgaggggcg ... gcgaggacagGCGCCCAAGGTGGTGATGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCTG
EST: TGGGCCCGCACGACGTGGTGCCGCTCAACGACGTGCCCGTGCAGCCCAAG GCGCCCAATGGTGGTGATGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCTEST: gi|15368356|gb|BI527782.1|BI527782
genomic: TGGGCCCGCACGACGTGGTGCCGCTCAACGACGTGCCCGTGCAGCCCAAGgtgaggggcg ... gcgaggacagGCGCCCAA-GGTGGTGATGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCT
EST: TGGGCCCGCACGACGTGGTGCCGCTCAACGACGTGCCCGTGCAGCCCAAG GCGCCCAAGGTGGGTGAAGGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCEST: gi|15373011|gb|BI532437.1|BI532437
genomic: TGGGCCCGCACGACGTGGTGCCGCTCAACGACGTGCCCGTGCAGCCCAAGgtgaggggcg ... gcgaggacagGCGCCCAAGGTGG-TGATGGG-TCCCGGCACGGGGCTGGGCGCGGCGCAGC
EST: TGGGCCCGCACGACGTGGTGCCGCTCAACGACGTGCCCGTGCAGCCCAAG GCGCCCAAGGTGGTGATGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCTGEST: gi|14232529|gb|BG851345.1|BG851345
genomic: TGGGCCCGCACGACGTGGTGCCGCTCAACGACGTGCCCGTGCAGCCCAAGgtgaggggcg ... gcgaggacagGCGCCCAAGGTGGTGATGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCTG
EST: TGGGCCCGCACGACGTGGTGCCGCTCAACGACGTGCCCGTGCAGCCCAAG GCGCCCAAGGTGGTGATGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCTG
genomic: TGGGCCCGCACGACGTGGTGCCGCTCAACGACGTGCCCGTGCAGCCCAAGgtgaggggcg ... gcgaggacagGCGCCCAAGGTGGTGATGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcgggaggaaggggctctaggctaacgaccgggagggctatctcaattgtggcgccgtgtgtcctgtcacgcacctgcgccggcgcctgcgaggacagGCGCCCAAGGTGGTGATGGGTCCCGGCACGGGGCTGGGCGCGGCGCAGCTGATGTGGGACACGGGACTGAACGCGTACAAGGTCTGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgcacc