1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcagattgctgttgcacatgatgccattatgccaggaatccaaagcacccgggcttcaatcgctggatgttccgcactgccgcagACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGCCTGTCGGCATGGAGGGTCGACCTGGAGGGCGCAGGCGCGACGCAAATCG
species | Chlamydomonas reinhardtii |
transcript | EDP09343 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAG ACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGCEST: gi|14233510|gb|BG852326.1|BG852326
genomic: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAGgtcagattgc ... actgccgcagACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGC
EST: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAG ACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGCEST: gi|10771456|gb|AV622279.1|AV622279
genomic: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAGgtcagattgc ... actgccgcagACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGC
EST: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAG ACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGCEST: gi|15368356|gb|BI527782.1|BI527782
genomic: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAGgtcagattgc ... actgccgcagACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGC
EST: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAG ACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGCEST: gi|22055102|gb|BQ811679.1|BQ811679
genomic: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAGgtcagattgc ... actgccgcagACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGC
EST: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAG ACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGCEST: gi|15373011|gb|BI532437.1|BI532437
genomic: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAGgtcagattgc ... actgccgcagACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGC
EST: GGACAGCGTGCATCGTGTATGCTAAACACAAG ACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGCEST: gi|14232529|gb|BG851345.1|BG851345
genomic: GGACAGCGTGCATCGTGTATGCTAAACACAAGgtcagattgc ... actgccgcagACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGC
EST: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAG ACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACCG
genomic: CGCGACTTGTCTCGAAACGGACAGCGTGCATCGTGTATGCTAAACACAAGgtcagattgc ... actgccgcagACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCA-CG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagattgctgttgcacatgatgccattatgccaggaatccaaagcacccgggcttcaatcgctggatgttccgcactgccgcagACCGAACTCGATGTGGTGCTTGTTGGCGACATCGGTGGCACGAATGCACGCCTGTCGGCATGGAGGGTCGACCTGGAGGGCGCAGGCGCGACGCAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG