1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggcgcccttgcctgcgtacgaatgcggctcctgccttccgtcctcaacatgttcatccgccaaccctgtcccgctgttcccgccgcgccgccaccctcagGGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTGCTGGGCCACAGCGACGTGGAGGTGCAGAAGCAGGCGCTGCTGTGCGTGC
species | Chlamydomonas reinhardtii |
transcript | EDP09300 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGCGGTGGGCTGCCACGACCTAGGCCAGTTCATCGTGTACCACCCCCAG GGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTGEST: gi|15372480|gb|BI531906.1|BI531906
genomic: TGGCGGTGGGCTGCCACGACCTAGGCCAGTTCATCGTGTACCACCCCCAGgtgcgaggtt ... ccaccctcagGGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTG
EST: TGGCGGTGGGCTGCCACGACCTAGGCCAGTTCATCGTGTACCACCCCCAG GGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTGEST: gi|22064261|gb|BQ815710.1|BQ815710
genomic: TGGCGGTGGGCTGCCACGACCTAGGCCAGTTCATCGTGTACCACCCCCAGgtgcgaggtt ... ccaccctcagGGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTG
EST: TGGCGGTGGGCTGCCACGACCTAGGCCAGTTCATCGTGTACCACCCCCAG GGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTGEST: gi|12252648|gb|BF862511.1|BF862511
genomic: TGGCGGTGGGCTGCCACGACCTAGGCCAGTTCATCGTGTACCACCCCCAGgtgcgaggtt ... ccaccctcagGGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTG
EST: TGGCGGTGGG-TTCCCCGACCTAGGCCAGTTCATCGTGTTCCACCTCCAG GGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGTTGGTGATCCGGCTGEST: gi|22064260|gb|BQ815709.1|BQ815709
genomic: TGGCGGTGGGCTGCCACGACCTAGGCCAGTTCATCGTGTACCACCCCCAGgtgcgaggtt ... ccaccctcagGGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTG
EST: CTGCCACGACCTAGGCCAGTTCATCGTGTACCACCCCCAG GGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTG
genomic: CTGCCACGACCTAGGCCAGTTCATCGTGTACCACCCCCAGgtgcgaggtt ... ccaccctcagGGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTG
aacatgttcatccgccaaccctgtcccgctgttcccgccgcgccgccaccctcagGGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTGCTGGGCCACAGCGACGTGGAGGTGCAGAAGCAGGCGCTGCTGTGCGTGC
ccaccctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcgcccttgcctgcgtacgaatgcggctcctgccttccgtcctcaacatgttcatccgccaaccctgtcccgctgttcccgccgcgccgccaccctcagGGCCGCTACATCGTGAACGACCTGCGCGGCAAGGAGCTGGTGATGCGGCTGCTGGGCCACAGCGACGTGGAGGTGCAGAAGCAGGCGCTGCTGTGCGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - cgtacgaa
- - - - - - - - - - - - - - - - - - - - - - - - -tgttcat