1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGCCGGCCTATGTGGAGGCCTTCATGACCGTGCTGAAGAATGTGACGAAGCCGGAGACCGTGCAGTACGTGCTGGCAGTGCTCATCCAAATGCTGCAGGgtaggcgtgtgcactcgcgctggcatcgcgattttgggggctgattgaacctctaccggcgacttggcgagctgttggggcggatatggttcccttaaga...
species | Chlamydomonas reinhardtii |
transcript | EDP09300 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCGGAGACCGTGCAGTACGTGCTGGCAGTGCTCATCCAAATGCTGCAGG AGAACCCCAGCCGCGCTCGCCTGTTCCACCAGCAGAGCGACCAGCACCTGTEST: gi|23359589|gb|BU647409.1|BU647409
genomic: GCCGGAGACCGTGCAGTACGTGCTGGCAGTGCTCATCCAAATGCTGCAGGgtaggcgtgt ... tgccccgcagAGAACCCCAGCCGCGCTCGCCTGTTCCACCAGCAGAGCGACCAGCACCTGT
EST: GCCGGAGACCGTGCAGTACGTGCTGGCAGTGCTCATCCAAATGCTGCAGG AGAACCCCAGCCGCGCTCGCCTGTTCCACCAGCAGAGCGACCAGCACCTGG
genomic: GCCGGAGACCGTGCAGTACGTGCTGGCAGTGCTCATCCAAATGCTGCAGGgtaggcgtgt ... tgccccgcagAGAACCCCAGCCGCGCTCGCCTGTTCCACCAGCAGAGCGACCAGCACCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCCGGCCTATGTGGAGGCCTTCATGACCGTGCTGAAGAATGTGACGAAGCCGGAGACCGTGCAGTACGTGCTGGCAGTGCTCATCCAAATGCTGCAGGgtaggcgtgtgcactcgcgctggcatcgcgattttgggggctgattgaacctctaccggcgacttggcgagctgttggggcggatatggttcccttaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatggtt