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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcatggcgcaggacatccggagatgcccagggcttggctgctggacacctagcaccagcggtcgttgacggttggccgccaggcacgcaaccgggataaatggccgtggacgcggcggtgtggcaggtgcgccggggacgctgacgcccagaggtttggctgctgttccgcgcagGCTGCTGCAGCGCCAGGACGACTGGTGGTCGCAGGATAAGGCCTGCAAGCTGCTAACTATCGTGATTGAGAGCCGGCCGCGCAAGGCGACCGGCGCAGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09300
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8576800|gb|BE129437.1|BE129437
EST:     AGCGACCAGCACCTGTCCTCGCAGCCGGACCCCTACACCGTGCTGGAGAG                         GCTGCTGCAGCGCCAGGACGACTGGTGGTCGCAGGATAAGGCCTGCAAGCT
genomic: AGCGACCAGCACCTGTCCTCGCAGCCGGACCCCTACACCGTGCTGGAGAGgtgagcatgg ... ttccgcgcagGCTGCTGCAGCGCCAGGACGACTGGTGGTCGCAGGATAAGGCCTGCAAGCT
EST: gi|23359589|gb|BU647409.1|BU647409
EST:     AGCGACCAGCACCTGGCCTCGCAGCCGGACCCCTACACCGTGCTGGAGAG                         GCTGCTGCAGCGCCAGGACGACTGGTGGTCGCAGGATAAGGCCTGCAAGCT
genomic: AGCGACCAGCACCTGTCCTCGCAGCCGGACCCCTACACCGTGCTGGAGAGgtgagcatgg ... ttccgcgcagGCTGCTGCAGCGCCAGGACGACTGGTGGTCGCAGGATAAGGCCTGCAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcaggtgcgccggggacgctgacgcccagaggtttggctgctgttccgcgcagGCTGCTGCAGCGCCAGGACGACTGGTGGTCGCAGGATAAGGCCTGCAAGCTGCTAACTATCGTGATTGAGAGCCGGCCGCGCAAGGCGACCGGCGCAGAG
                  cgctgac  putative branch site (score: 3)
                                          ctgttcc  putative PPT