1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcgcgggcgggggagatgaggggccgcaaccgggcatgagcgcggggcgcccgcacaggtctgcggtgcgtgcactgtggggatggaggctcgcgacacgggtcgcattgcggccgggtgcattgccctgcacacccgcaaccctccaacgaccgcttcgctgccccttttcctgcctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGCGGCGAGAAGTGGGTGCCCAAGGACGGCGAGACCACGCTGACGGGGGCAC
species | Chlamydomonas reinhardtii |
transcript | EDP08001 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAG CCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCEST: gi|14233113|gb|BG851929.1|BG851929
genomic: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAGgtgcgcgggc ... ctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGC
EST: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAG CCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGCEST: gi|14233112|gb|BG851928.1|BG851928
genomic: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAGgtgcgcgggc ... ctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGC
EST: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAG CCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGCEST: gi|22076860|gb|BQ825636.1|BQ825636
genomic: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAGgtgcgcgggc ... ctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGC
EST: AGGCAAGCCCAAG CCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGCEST: gi|16433735|gb|BI998961.1|BI998961
genomic: AGGCAAGCCCAAGgtgcgcgggc ... ctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGC
EST: AGGGAGGCAAGCCCAAG CCTGGGTTTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCCCCGTGCACGGCEST: gi|23366199|gb|BU654019.1|BU654019
genomic: AGGGAGGCAAGCCCAAGgtgcgcgggc ... ctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGC
EST: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAG CCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGCEST: gi|239841975|gb|GR283832.1|GR283832
genomic: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAGgtgcgcgggc ... ctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGC
EST: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAG CCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGCEST: gi|161799882|gb|FC087834.1|FC087834
genomic: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAGgtgcgcgggc ... ctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGC
EST: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAG CCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGCEST: gi|161821167|gb|FC106446.1|FC106446
genomic: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAGgtgcgcgggc ... ctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGC
EST: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAG CCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGC
genomic: AGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAGgtgcgcgggc ... ctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGC
acacccgcaaccctccaacgaccgcttcgctgccccttttcctgcctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGCGGCGAGAAGTGGGTGCCCAAGGACGGCGAGACCACGCTGACGGGGGCAC
ccgcttcgctgcccct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgggcgggggagatgaggggccgcaaccgggcatgagcgcggggcgcccgcacaggtctgcggtgcgtgcactgtggggatggaggctcgcgacacgggtcgcattgcggccgggtgcattgccctgcacacccgcaaccctccaacgaccgcttcgctgccccttttcctgcctcatcgcagCCTGGGTCTCAGTACCGCTTGAAGGCGGAGCCCGCCGGCGCCGTGCACGGCGGCGAGAAGTGGGTGCCCAAGGACGGCGAGACCACGCTGACGGGGGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT