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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCATCCGCGTGTATGAAGTGGCCACCTTCTACACCATGTTCAACCGCACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaagggtgtcgcctcccagtggaggggctgctgggttagccgggcacagcggcggcggtgcagggccacgtcgaggaaggtgaagggggaggag...

Basic information

species Chlamydomonas reinhardtii
transcript EDP08001
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22075436|gb|BQ824212.1|BQ824212
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: gi|10769702|gb|AV620527.1|AV620527
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: gi|22076861|gb|BQ825637.1|BQ825637
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: gi|9460841|gb|BE453437.1|BE453437
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: gi|15698755|gb|BI723060.1|BI723060
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: gi|15373511|gb|BI532937.1|BI532937
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: gi|161799882|gb|FC087834.1|FC087834
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: gi|161821167|gb|FC106446.1|FC106446
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: gi|8828374|gb|BE212104.1|BE212104
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: gi|22052002|gb|BQ809998.1|BQ809998
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: gi|10191190|gb|BE761266.1|BE761266
EST:     ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG                         GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCCATCCGCGTGTATGAAGTGGCCACCTTCTACACCATGTTCAACCGCACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaagggtgtcgcctcccagtggaggggctgctgggttagccgggcacagcggcggcggtgcagggccacgtcgaggaaggtgaagggggaggag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgggt