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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCAGCGGTGCAACTTTGCCACCAACTCGACCGATATCTTCAACATTCACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaagagaggcgtggaagggctgtcaggcacacacagaaggaaacgcgtgcatcagcccaacactctctacctgcttgacctggtgcgcaccgtgcatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP08001
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22075436|gb|BQ824212.1|BQ824212
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|22072592|gb|BQ821930.1|BQ821930
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|49464985|gb|BP092898.1|BP092898
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|10127534|gb|BE726238.1|BE726238
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|22076861|gb|BQ825637.1|BQ825637
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|49458814|gb|BP086727.1|BP086727
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|6543130|gb|AV388914.1|AV388914
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCA
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCA
EST: gi|10782399|gb|AV639079.1|AV639079
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|9460841|gb|BE453437.1|BE453437
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|10774679|gb|AV625502.1|AV625502
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|10780534|gb|AV637214.1|AV637214
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|10774977|gb|AV625800.1|AV625800
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAA
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAA
EST: gi|10778735|gb|AV635415.1|AV635415
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|15698755|gb|BI723060.1|BI723060
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|15373511|gb|BI532937.1|BI532937
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|239841977|gb|GR283834.1|GR283834
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|239841976|gb|GR283833.1|GR283833
EST:     ACAAGGACACGCCACAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCATCGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|161799882|gb|FC087834.1|FC087834
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|8828374|gb|BE212104.1|BE212104
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|22052002|gb|BQ809998.1|BQ809998
EST:     CAAGGACACGCTCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: CAAGGACACGC-CAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
EST: gi|10191190|gb|BE761266.1|BE761266
EST:     ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAG                         GCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC
genomic: ACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaa ... gtgcatgcagGCTACTCTGAAAGTTGTCAACGATATCATCGCGCGGTACCCGCCGAACTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGCAGCGGTGCAACTTTGCCACCAACTCGACCGATATCTTCAACATTCACAAGGACACGCCAGAGAACAATGCTGCGACCAGCTTTGAGTTTAGCGAGgcaagcgaaagagaggcgtggaagggctgtcaggcacacacagaaggaaacgcgtgcatcagcccaacactctctacctgcttgacctggtgcgcaccgtgcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC