1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcatacgcacatgcgcatcgcgtcgcccaaccccactcacccggaacctgggcttccctccatctgcgcctctcattcttaaacacacacacgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATCGGCATCGGCCAGACCACGCAGGACGGGCTGTTCACACTGGGCGAGATG
species | Chlamydomonas reinhardtii |
transcript | EDP08001 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATEST: gi|10769702|gb|AV620527.1|AV620527
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATEST: gi|22076861|gb|BQ825637.1|BQ825637
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATEST: gi|9460841|gb|BE453437.1|BE453437
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATEST: gi|15698755|gb|BI723060.1|BI723060
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATEST: gi|15373511|gb|BI532937.1|BI532937
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATEST: gi|161799882|gb|FC087834.1|FC087834
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATEST: gi|161821167|gb|FC106446.1|FC106446
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATEST: gi|8828374|gb|BE212104.1|BE212104
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATEST: gi|22052002|gb|BQ809998.1|BQ809998
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATEST: gi|10191190|gb|BE761266.1|BE761266
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
EST: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAG GCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
genomic: ACGAAAATTGGCAAGTACCACGTGCAGATTTGCGGCACCACTCCTTGCAGgtaagcaaag ... acgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCAT
acctgggcttccctccatctgcgcctctcattcttaaacacacacacgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATCGGCATCGGCCAGACCACGCAGGACGGGCTGTTCACACTGGGCGAGATG
attcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatacgcacatgcgcatcgcgtcgcccaaccccactcacccggaacctgggcttccctccatctgcgcctctcattcttaaacacacacacgtacacagGCTGCAGGGCTCCCAGAAGATTGAGGAGGCCATCACCAAGCACCTCGGCATCGGCATCGGCCAGACCACGCAGGACGGGCTGTTCACACTGGGCGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - acgcaca
- - - - - - - - - - - - -cccaacc
- - - - - - - - - - - - - - - - -cactcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaca