1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccccgcccattcagtgcgcgagtcttatcgtaaaccgctgctgccaacgcgccccttgtgtgcttgcatctaaactaccactgctgccgcacggctgcagGGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAG
species | Chlamydomonas reinhardtii |
transcript | EDP08001 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGCGCTTGCGTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAG GGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGACEST: gi|14233113|gb|BG851929.1|BG851929
genomic: TGGGCGCTTGCGTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAGgtgcggagga ... acggctgcagGGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGAC
EST: GTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAG GGTG-GTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGACEST: gi|23366199|gb|BU654019.1|BU654019
genomic: GTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAGgtgcggagga ... acggctgcagGGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGAC
EST: TGGGCGCTTGCGTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAG GGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGACEST: gi|239841975|gb|GR283832.1|GR283832
genomic: TGGGCGCTTGCGTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAGgtgcggagga ... acggctgcagGGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGAC
EST: TGGGCGCTTGCGTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAG GGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGACEST: gi|161799882|gb|FC087834.1|FC087834
genomic: TGGGCGCTTGCGTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAGgtgcggagga ... acggctgcagGGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGAC
EST: TGGGCGCTTGCGTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAG GGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGACEST: gi|161821167|gb|FC106446.1|FC106446
genomic: TGGGCGCTTGCGTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAGgtgcggagga ... acggctgcagGGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGAC
EST: TGGGCGCTTGCGTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAG GGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGAC
genomic: TGGGCGCTTGCGTGAACGCGCCCATGGTGGCCATCGCCGACTACACCAAGgtgcggagga ... acggctgcagGGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGAC
aacgcgccccttgtgtgcttgcatctaaactaccactgctgccgcacggctgcagGGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAG
atctaaa putative branch site (score: 3)
atctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccgcccattcagtgcgcgagtcttatcgtaaaccgctgctgccaacgcgccccttgtgtgcttgcatctaaactaccactgctgccgcacggctgcagGGTGTGTCGGGCTTTGAGTACATCTACTACGAGGACCTGACGCCCAAGGACATTGTCAACATCCTGGACACCATCAAGAAGGGAGGCAAGCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - ccattca
- - - - - - - - - - - - - - cgtaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actacca