1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCCGGCCCTGACGGAGCGGCATCCAGCGGCGGCGACGGAGGTGGCTTCTTCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAGgcgagtgtcgcggggccgtgtttgggggcgcgtctttgtttgggagcggcttgtgcgggggacatcgccgtgcttgaaaaacacacaggcagcaggcacc...
species | Chlamydomonas reinhardtii |
transcript | EDP07835 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCGCGCCTGTGCAGCAG GTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAGEST: gi|18690415|gb|BM519263.1|BM519263
genomic: CCGCGCCTGTGCAGCAGgcgagtgtcg ... gaacacacagGTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
EST: TCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAG GTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAGEST: gi|22052028|gb|BQ810009.1|BQ810009
genomic: TCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAGgcgagtgtcg ... gaacacacagGTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
EST: TCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAG GTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAGEST: gi|22059950|gb|BQ813632.1|BQ813632
genomic: TCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAGgcgagtgtcg ... gaacacacagGTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
EST: CGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAG GTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
genomic: CGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAGgcgagtgtcg ... gaacacacagGTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCGGCCCTGACGGAGCGGCATCCAGCGGCGGCGACGGAGGTGGCTTCTTCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAGgcgagtgtcgcggggccgtgtttgggggcgcgtctttgtttgggagcggcttgtgcgggggacatcgccgtgcttgaaaaacacacaggcagcaggcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaca