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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGGCCCTGACGGAGCGGCATCCAGCGGCGGCGACGGAGGTGGCTTCTTCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAGgcgagtgtcgcggggccgtgtttgggggcgcgtctttgtttgggagcggcttgtgcgggggacatcgccgtgcttgaaaaacacacaggcagcaggcacc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07835
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49460488|gb|BP088401.1|BP088401
EST:     CCGCGCCTGTGCAGCAG                         GTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
genomic: CCGCGCCTGTGCAGCAGgcgagtgtcg ... gaacacacagGTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
EST: gi|18690415|gb|BM519263.1|BM519263
EST:     TCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAG                         GTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
genomic: TCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAGgcgagtgtcg ... gaacacacagGTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
EST: gi|22052028|gb|BQ810009.1|BQ810009
EST:     TCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAG                         GTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
genomic: TCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAGgcgagtgtcg ... gaacacacagGTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
EST: gi|22059950|gb|BQ813632.1|BQ813632
EST:     CGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAG                         GTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG
genomic: CGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAGgcgagtgtcg ... gaacacacagGTGACGGACCTCAGTGAGGACCCCTTCCAGCCGCCGCCGCTGCCCAAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCCGGCCCTGACGGAGCGGCATCCAGCGGCGGCGACGGAGGTGGCTTCTTCGCGTCGCTATTCGGCGGCAGCGCGCCGGCGCCCGCGCCTGTGCAGCAGgcgagtgtcgcggggccgtgtttgggggcgcgtctttgtttgggagcggcttgtgcgggggacatcgccgtgcttgaaaaacacacaggcagcaggcacc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaca