1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcacgtaacgaatgccgtgtcccgtgtggccgtatctacccttccgtgcctaacccgaggtgacatgtcactcgccgcgcttgtgtttcgcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG
species | Chlamydomonas reinhardtii |
transcript | EDP07835 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|14240517|gb|BG859333.1|BG859333
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|22051433|gb|BQ809667.1|BQ809667
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|14232108|gb|BG850924.1|BG850924
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|14228865|gb|BG847681.1|BG847681
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|10126836|gb|BE725540.1|BE725540
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|23361992|gb|BU649684.1|BU649684
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|22059952|gb|BQ813634.1|BQ813634
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|22068466|gb|BQ818401.1|BQ818401
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCACCTGGGGTEST: gi|22060214|gb|BQ813719.1|BQ813719
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|49464799|gb|BP092712.1|BP092712
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|22054821|gb|BQ811540.1|BQ811540
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|15691896|gb|BI716185.1|BI716185
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|22059951|gb|BQ813633.1|BQ813633
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AGGCACCAGGAACAGCCNCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTEST: gi|14242508|gb|BG861324.1|BG861324
genomic: AGGCACCAGGAACAGCC-CCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
cgtgcctaacccgaggtgacatgtcactcgccgcgcttgtgtttcgcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG
gcctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcacgtaacgaatgccgtgtcccgtgtggccgtatctacccttccgtgcctaacccgaggtgacatgtcactcgccgcgcttgtgtttcgcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-gcacgta
- - - - - - - - - - - ccgtgtg
- - - - - - - - - - - - - - - - gtatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcactcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt