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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactgagtcagcgtttggaggtgtgggttgggaggtgtagcagcaggaaggccggggcaggagggcgggtgccggcggtgaagcgagcagtgggcg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07835
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22070272|gb|BQ819671.1|BQ819671
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
EST: gi|14240517|gb|BG859333.1|BG859333
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
EST: gi|22051433|gb|BQ809667.1|BQ809667
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGC
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGC
EST: gi|14232108|gb|BG850924.1|BG850924
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCCGGGTGCCATGACGGGCGGCTTCCT
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGC-GGGTGCCATGACGGGCGGCTTCCT
EST: gi|14228865|gb|BG847681.1|BG847681
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
EST: gi|10126836|gb|BE725540.1|BE725540
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
EST: gi|23361992|gb|BU649684.1|BU649684
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
EST: gi|22059952|gb|BQ813634.1|BQ813634
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGA
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGA
EST: gi|22068466|gb|BQ818401.1|BQ818401
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
EST: gi|22060214|gb|BQ813719.1|BQ813719
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAATAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGC
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGC
EST: gi|49464799|gb|BP092712.1|BP092712
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
EST: gi|22054821|gb|BQ811540.1|BQ811540
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
EST: gi|15691896|gb|BI716185.1|BI716185
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
EST: gi|14242508|gb|BG861324.1|BG861324
EST:     GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAG                         GAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG
genomic: GTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactga ... tgacgcacagGAGGACCCCTGGAACGCCATCGGCGCGGGTGCCATGACGGGCGGCTTCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGTCTCACGTTCGCGCTGTTCGACTGCTCGTTGCAGTACGTGCGCAAGAAGgtgagactgagtcagcgtttggaggtgtgggttgggaggtgtagcagcaggaaggccggggcaggagggcgggtgccggcggtgaagcgagcagtgggcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcagca