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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCCTTTGCGATGGGTGCTGTGGGCGGCGGCATCTGGCATCTCATAAAAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaattgggagaaaatgggatgaacgttgcgtaaagcgcacgggagaagcgcgagaagctcaaagaggatgatcatcagcgcctttcgctcgat...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07835
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22070272|gb|BQ819671.1|BQ819671
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|14240517|gb|BG859333.1|BG859333
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|22051433|gb|BQ809667.1|BQ809667
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|14232108|gb|BG850924.1|BG850924
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|14228865|gb|BG847681.1|BG847681
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|10126836|gb|BE725540.1|BE725540
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|23361992|gb|BU649684.1|BU649684
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|22059952|gb|BQ813634.1|BQ813634
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|22068466|gb|BQ818401.1|BQ818401
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCACCTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|22060214|gb|BQ813719.1|BQ813719
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|49464799|gb|BP092712.1|BP092712
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|22054821|gb|BQ811540.1|BQ811540
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|15691896|gb|BI716185.1|BI716185
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|22059951|gb|BQ813633.1|BQ813633
EST:     AGGCACCAGGAACAGCCNCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AGGCACCAGGAACAGCC-CCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
EST: gi|14242508|gb|BG861324.1|BG861324
EST:     AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAG                         GCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT
genomic: AAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaa ... gcaactgcagGCCGTGCGCCGCGAGGCTCCCCGCCTGGGAGGCAGCTTCGCCAACTGGGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAGCCTTTGCGATGGGTGCTGTGGGCGGCGGCATCTGGCATCTCATAAAAGGCACCAGGAACAGCCCCTCGGGTTACCGCACGCGAGGAGCCATTGAGgtgcgcccaattgggagaaaatgggatgaacgttgcgtaaagcgcacgggagaagcgcgagaagctcaaagaggatgatcatcagcgcctttcgctcgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcatca