1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gggctggagtcttgcgcgggggaccacgtggcgtgagcaggcagcaggacggcaacggcccatgactgctggacctggcctcacacaccctaccccgcagGGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTACGGCGGCTGGAAGGCGGTGGCCATTGGCGCCGGACACCAGGCCGCCAAC
species | Chlamydomonas reinhardtii |
transcript | EDP06417 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTACGCTGGCTG GGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTAEST: gi|15368384|gb|BI527810.1|BI527810
genomic: CAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTACGCTGGCTGgtgagcgcac ... taccccgcagGGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTA
EST: CAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTACGCTGGCTG GGACGAGCACTAEST: gi|14242186|gb|BG861002.1|BG861002
genomic: CAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTACGCTGGCTGgtgagcgcac ... taccccgcagGGACGAGCACTA
EST: CAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTACGCTGGCTG GGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTAEST: gi|22057992|gb|BQ812814.1|BQ812814
genomic: CAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTACGCTGGCTGgtgagcgcac ... taccccgcagGGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTA
EST: CAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTACGCTGGCTG GGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTAEST: gi|10781499|gb|AV638179.1|AV638179
genomic: CAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTACGCTGGCTGgtgagcgcac ... taccccgcagGGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTA
EST: CAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTACGCTGGCTG GGACGAGCACTACGGCTTCCAGCTGTACCAGTEST: gi|22054414|gb|BQ811352.1|BQ811352
genomic: CAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTACGCTGGCTGgtgagcgcac ... taccccgcagGGACGAGCACTACGGCTTCCAGCTGTACCAGT
EST: AGTTTGGAGGGCAGCGGCCGTTCGGGTGTGTCGCTGCTGTACGCTGGCTG GGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTA
genomic: AGTTTGGAGGGCAGCGGCCGTTCGG-TGTGTCGCTGCTGTACGCTGGCTGgtgagcgcac ... taccccgcagGGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTA
aggacggcaacggcccatgactgctggacctggcctcacacaccctaccccgcagGGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTACGGCGGCTGGAAGGCGGTGGCCATTGGCGCCGGACACCAGGCCGCCAAC
gcctcac putative branch site (score: 3)
ccctacccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggctggagtcttgcgcgggggaccacgtggcgtgagcaggcagcaggacggcaacggcccatgactgctggacctggcctcacacaccctaccccgcagGGACGAGCACTACGGCTTCCAGCTGTACCAGTCCGACCCCAGCGGCAACTACGGCGGCTGGAAGGCGGTGGCCATTGGCGCCGGACACCAGGCCGCCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacacc