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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaggcgggctcgcatgggatcgcgcccaatttccagggctggcgctaacttgcatcgtctttcggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06417
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15368016|gb|BI527442.1|BI527442
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGCGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|15368384|gb|BI527810.1|BI527810
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22062353|gb|BQ814779.1|BQ814779
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22069606|gb|BQ819159.1|BQ819159
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|14242186|gb|BG861002.1|BG861002
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|10768565|gb|AV619390.1|AV619390
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|49463986|gb|BP091899.1|BP091899
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|49464059|gb|BP091972.1|BP091972
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|49463749|gb|BP091662.1|BP091662
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|10776510|gb|AV633190.1|AV633190
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22062426|gb|BQ814806.1|BQ814806
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22071985|gb|BQ821323.1|BQ821323
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22057992|gb|BQ812814.1|BQ812814
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGAACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGAT
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGA-CACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGAT
EST: gi|10781499|gb|AV638179.1|AV638179
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22062239|gb|BQ814694.1|BQ814694
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22054414|gb|BQ811352.1|BQ811352
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|10768408|gb|AV619233.1|AV619233
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgcgcccaatttccagggctggcgctaacttgcatcgtctttcggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG
                        cgctaac  putative branch site (score: 2)
                                       tctttcg  putative PPT
         aattt  TA-rich tract