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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcgcatctcccgaagacccgaactaaccagcactttccccttcacatttcccttcacattcccctgccccctccacctcttccccctcttcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACCTGTTCGCCTACCAGGAGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGT

Basic information

species Chlamydomonas reinhardtii
transcript EDP06417
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15368016|gb|BI527442.1|BI527442
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|15368384|gb|BI527810.1|BI527810
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|22062353|gb|BQ814779.1|BQ814779
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|22069606|gb|BQ819159.1|BQ819159
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|14242186|gb|BG861002.1|BG861002
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|10768565|gb|AV619390.1|AV619390
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|49463986|gb|BP091899.1|BP091899
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGACTGCC-AGTGCTAC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCC-GCCCAGCGCTAC
EST: gi|49464059|gb|BP091972.1|BP091972
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCTGCC-AGCGCTAC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCC-GCCCAGCGCTAC
EST: gi|49463749|gb|BP091662.1|BP091662
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|10776510|gb|AV633190.1|AV633190
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|22062426|gb|BQ814806.1|BQ814806
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|22071985|gb|BQ821323.1|BQ821323
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|22057992|gb|BQ812814.1|BQ812814
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|10781499|gb|AV638179.1|AV638179
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|22062239|gb|BQ814694.1|BQ814694
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|22054414|gb|BQ811352.1|BQ811352
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
EST: gi|10768408|gb|AV619233.1|AV619233
EST:     GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAG                         CCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC
genomic: GATGTACCGGATAGACAACCACATCGCCTGCTCGGTGGCGGGTATCACAGgtgggggcgg ... tcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcccttcacattcccctgccccctccacctcttccccctcttcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACCTGTTCGCCTACCAGGAGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGT
              ttcccctgccccctcc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcgcatctcccgaagacccgaactaaccagcactttccccttcacatttcccttcacattcccctgccccctccacctcttccccctcttcctctccagCCGACGCCAACATCCTGATCAACACGTGCCGCCTGGCCGCCCAGCGCTACCTGTTCGCCTACCAGGAGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - -aagaccc
- - - - - - - - - - -aactaac