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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAACACGTGCCGCCTGGCCGCCCAGCGCTACCTGTTCGCCTACCAGGAGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAGgtgagaaacaacgggcggtggcggggtggggaggggcggggggattctttgccgagccccgcgaattagtcccgtcatcagggggagtgtttgaggatac...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06417
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15368016|gb|BI527442.1|BI527442
EST:     AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAG                         GGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTAC
genomic: AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAGgtgagaaaca ... ccccacacagGGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTAC
EST: gi|15368384|gb|BI527810.1|BI527810
EST:     AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAG                         GGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTAC
genomic: AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAGgtgagaaaca ... ccccacacagGGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTAC
EST: gi|14242186|gb|BG861002.1|BG861002
EST:     AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAG                         GGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTAC
genomic: AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAGgtgagaaaca ... ccccacacagGGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTAC
EST: gi|22071985|gb|BQ821323.1|BQ821323
EST:     AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAG                         GGGTACACCCAGTT
genomic: AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAGgtgagaaaca ... ccccacacagGGGTACACCCAGTT
EST: gi|22057992|gb|BQ812814.1|BQ812814
EST:     AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAG                         GGGT-CACCCAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTAC
genomic: AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAGgtgagaaaca ... ccccacacagGGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTAC
EST: gi|10781499|gb|AV638179.1|AV638179
EST:     AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAG                         GGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTAC
genomic: AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAGgtgagaaaca ... ccccacacagGGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGGTGTGTCGCTGCTGTAC
EST: gi|22054414|gb|BQ811352.1|BQ811352
EST:     AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAG                         GGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGGGTGTGTCGCTGCTGTA
genomic: AGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAGgtgagaaaca ... ccccacacagGGGTACACCCAGTTTGGAGGGCAGCGGCCGTTCGG-TGTGTCGCTGCTGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCAACACGTGCCGCCTGGCCGCCCAGCGCTACCTGTTCGCCTACCAGGAGCCCATGCCGGTGGAGCAGCTGGTGCGCACCGTGTGCGACACCAAGCAGgtgagaaacaacgggcggtggcggggtggggaggggcggggggattctttgccgagccccgcgaattagtcccgtcatcagggggagtgtttgaggatac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtcatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgttt