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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTATGCCATGGAGGCCATTTCCAACGCCGGTGCGTCCATTGGCCTGCTGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggcgggctcgcatgggatcgcgcccaatttccagggctggcgctaacttgcatcgtctttcggtcgcgtag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06417
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15368016|gb|BI527442.1|BI527442
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGCGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|15368384|gb|BI527810.1|BI527810
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22062353|gb|BQ814779.1|BQ814779
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22069606|gb|BQ819159.1|BQ819159
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|14242186|gb|BG861002.1|BG861002
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|10768565|gb|AV619390.1|AV619390
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|49463986|gb|BP091899.1|BP091899
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|49464059|gb|BP091972.1|BP091972
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|49463749|gb|BP091662.1|BP091662
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|10776510|gb|AV633190.1|AV633190
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22062426|gb|BQ814806.1|BQ814806
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22071985|gb|BQ821323.1|BQ821323
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22057992|gb|BQ812814.1|BQ812814
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGAACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGAT
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGA-CACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGAT
EST: gi|10781499|gb|AV638179.1|AV638179
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22062239|gb|BQ814694.1|BQ814694
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|22054414|gb|BQ811352.1|BQ811352
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
EST: gi|10768408|gb|AV619233.1|AV619233
EST:     TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAG                         CTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA
genomic: TGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggc ... ggtcgcgtagCTCCTAGACACGCACGCGGTGGGTGTGCGCCGAGAGAAGATGTACCGGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGTATGCCATGGAGGCCATTTCCAACGCCGGTGCGTCCATTGGCCTGCTGGCGAAGGATGGAGTCGTCCTGATTGCGGAGAAGAAGATCACATCCAAGgtaactaggcgggctcgcatgggatcgcgcccaatttccagggctggcgctaacttgcatcgtctttcggtcgcgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA