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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtggggcgcgcggggctagggccacacacagcactgggtgggacagcccaatacgcccaggtgcctacctaccgtactgcaaagggtggtgggaga...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04585
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14236668|gb|BG855484.1|BG855484
EST:     GTGCTGGCCTTCCTCGCCGNCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCC
genomic: GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCC
EST: gi|14236732|gb|BG855548.1|BG855548
EST:     GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGNCGACA-
genomic: GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAG-CGACAA
EST: gi|15691859|gb|BI716164.1|BI716164
EST:     GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGANCA-
genomic: GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGA-CAA
EST: gi|8932943|gb|BE227704.1|BE227704
EST:     GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGGCAAG
genomic: GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACAAG
EST: gi|22054649|gb|BQ811450.1|BQ811450
EST:     GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACA
genomic: GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACA
EST: gi|16073013|gb|BI875009.1|BI875009
EST:     GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACAAG
genomic: GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACAAG
EST: gi|12254136|gb|BF863992.1|BF863992
EST:     GCCGCCATCATTTCTCTGGTTGAC                         GCCCTCAAGTGCTCCCCCGACTGCTGCTGTTCCGGCGATGACAGCGCCAAG
genomic: GCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACAAG
EST: gi|23358675|gb|BU646495.1|BU646495
EST:     GCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACAAG
genomic: GCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACAAG
EST: gi|14238850|gb|BG857666.1|BG857666
EST:     GTGNTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGNCAAG
genomic: GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACAAG
EST: gi|16073011|gb|BI875007.1|BI875007
EST:     GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACAAG
genomic: GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACAAG
EST: gi|14238851|gb|BG857667.1|BG857667
EST:     GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGNACA-
genomic: GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCG-ACAA
EST: gi|16072620|gb|BI874616.1|BI874616
EST:     GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGAC
genomic: GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGAC
EST: gi|14236666|gb|BG855482.1|BG855482
EST:     GCCGCCATCATCTCCCTGGCTGAC                         GCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGNCAAG
genomic: GCCGCCATCATCTCCCTGGCTGACgtaagtgggg ... ccgcgtgcagGCCATCAAGTGCTGCCGCGACTGCTGCTGCTCCGGCGATGACAGCGACAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGACgtaagtggggcgcgcggggctagggccacacacagcactgggtgggacagcccaatacgcccaggtgcctacctaccgtactgcaaagggtggtgggaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgcct