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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttttggggtggagcgacgcgggtgcgcacgcatgaaaccaccctcgcacgcatatcaccaagccacggcacgagcccttgctgacccacacaccgggctatcatcaccggccctgcctccagcgcctcaccggcagcttccctttcctgaatgctgccaacctccctcccacacgactgccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACTGCAACTACGCCTACGCGGTGTGCGGCATCAGTATGTGCGTATCTCTCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04585
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49459453|gb|BP087366.1|BP087366
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|22067867|gb|BQ817882.1|BQ817882
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|14236668|gb|BG855484.1|BG855484
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|22072348|gb|BQ821686.1|BQ821686
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|14236732|gb|BG855548.1|BG855548
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|15691859|gb|BI716164.1|BI716164
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10782499|gb|AV639179.1|AV639179
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|6546530|gb|AV392314.1|AV392314
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10774839|gb|AV625662.1|AV625662
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10791264|gb|AV628630.1|AV628630
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGG
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGG
EST: gi|15701276|gb|BI725581.1|BI725581
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10126508|gb|BE725212.1|BE725212
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|49461806|gb|BP089719.1|BP089719
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|22054649|gb|BQ811450.1|BQ811450
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|22067033|gb|BQ817299.1|BQ817299
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|22073870|gb|BQ823202.1|BQ823202
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|16073013|gb|BI875009.1|BI875009
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10775893|gb|AV632573.1|AV632573
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|22077038|gb|BQ825814.1|BQ825814
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10780196|gb|AV636876.1|AV636876
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|16073011|gb|BI875007.1|BI875007
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|6547475|gb|AV393259.1|AV393259
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10775757|gb|AV632437.1|AV632437
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10778419|gb|AV635099.1|AV635099
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|14238851|gb|BG857667.1|BG857667
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|16072620|gb|BI874616.1|BI874616
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|49461504|gb|BP089417.1|BP089417
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|49460782|gb|BP088695.1|BP088695
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|22062219|gb|BQ814682.1|BQ814682
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10780745|gb|AV637425.1|AV637425
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10775493|gb|AV632173.1|AV632173
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
EST: gi|10779846|gb|AV636526.1|AV636526
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGAT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGAT
EST: gi|22060919|gb|BQ813960.1|BQ813960
EST:     GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCA                         CACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT
genomic: GGCAATCCACCTTCAGGACTATAAATTCTCCGGCTCCGGGACGAACACCAgtgagtgttt ... ccacaaacagCACTCACTGGCAGCTGCCTGCTGTCAAAGGATTTCACCAACCAGGACTACT