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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCTGTCAAAGGATTTCACCAACCAGGACTACTGCAACTACGCCTACGCGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgcttaccgcgtggggtccaacaccccagcaccgggccttgggtggtaccagtgagctgccagggaggcgcagagcctgctgtaagaagcccggc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04585
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49459453|gb|BP087366.1|BP087366
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|22067867|gb|BQ817882.1|BQ817882
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|14236668|gb|BG855484.1|BG855484
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|22072348|gb|BQ821686.1|BQ821686
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|14236732|gb|BG855548.1|BG855548
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|15691859|gb|BI716164.1|BI716164
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|10782499|gb|AV639179.1|AV639179
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATT
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATT
EST: gi|6546530|gb|AV392314.1|AV392314
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|10774839|gb|AV625662.1|AV625662
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|15701276|gb|BI725581.1|BI725581
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|10126508|gb|BE725212.1|BE725212
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|49461806|gb|BP089719.1|BP089719
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAAT
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAAT
EST: gi|22054649|gb|BQ811450.1|BQ811450
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|22067033|gb|BQ817299.1|BQ817299
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|22073870|gb|BQ823202.1|BQ823202
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|16073013|gb|BI875009.1|BI875009
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|10775893|gb|AV632573.1|AV632573
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|22077038|gb|BQ825814.1|BQ825814
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|10780196|gb|AV636876.1|AV636876
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|16073011|gb|BI875007.1|BI875007
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|6547475|gb|AV393259.1|AV393259
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|10775757|gb|AV632437.1|AV632437
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|10778419|gb|AV635099.1|AV635099
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|14238851|gb|BG857667.1|BG857667
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|16072620|gb|BI874616.1|BI874616
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|49461504|gb|BP089417.1|BP089417
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|49460782|gb|BP088695.1|BP088695
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|22062219|gb|BQ814682.1|BQ814682
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|10780745|gb|AV637425.1|AV637425
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|10775493|gb|AV632173.1|AV632173
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
EST: gi|22060919|gb|BQ813960.1|BQ813960
EST:     CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTG                         TGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG
genomic: CGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgctt ... ccgcccgcagTGCATCACCTGCAACGCCTGCGGCTGCGGCTCCTGGGTCGAATTCATCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGCTGTCAAAGGATTTCACCAACCAGGACTACTGCAACTACGCCTACGCGGTGTGCGGCATCAGTATGTGCGTATCTCTCGCCGCTTCGCTCTTCCTGgtgcgtgcttaccgcgtggggtccaacaccccagcaccgggccttgggtggtaccagtgagctgccagggaggcgcagagcctgctgtaagaagcccggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacacc
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