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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCTTCTTCGCATTTAACTGTCGCCGCAAGTCACCAAGGATGGGTTGCTGCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgcattggaacacgagcgttggagcgcagggtgttgcgagtaccggagcgtcgattggacgacaagcgtcttaagcgtgctattcgatgctggc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04585
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49459453|gb|BP087366.1|BP087366
EST:     AAAAA-TTGTTTCTCGGG-TTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: AAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|22067867|gb|BQ817882.1|BQ817882
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|14236668|gb|BG855484.1|BG855484
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|22072348|gb|BQ821686.1|BQ821686
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|14236732|gb|BG855548.1|BG855548
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|15691859|gb|BI716164.1|BI716164
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10782499|gb|AV639179.1|AV639179
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|6546530|gb|AV392314.1|AV392314
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10774839|gb|AV625662.1|AV625662
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10791264|gb|AV628630.1|AV628630
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|15701276|gb|BI725581.1|BI725581
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10126508|gb|BE725212.1|BE725212
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|49461806|gb|BP089719.1|BP089719
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|22054649|gb|BQ811450.1|BQ811450
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|22067033|gb|BQ817299.1|BQ817299
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|22073870|gb|BQ823202.1|BQ823202
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|16073013|gb|BI875009.1|BI875009
EST:     CACTACGATATGCAAAAATTTGTTTCCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: CACTACGATATGCAAAAATTTGTTT-CTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10775893|gb|AV632573.1|AV632573
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|22077038|gb|BQ825814.1|BQ825814
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10780196|gb|AV636876.1|AV636876
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|16073011|gb|BI875007.1|BI875007
EST:     CACTACGATATGCAAAAATTTGTTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: CACTACGATATGCAAAAATTTG-TTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|6547475|gb|AV393259.1|AV393259
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10775757|gb|AV632437.1|AV632437
EST:     CACTACGATATGCAAAAATTTGTTTCTCGCGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: CACTACGATATGCAAAAATTTGTTTCTCG-GGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|22059471|gb|BQ813448.1|BQ813448
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10778419|gb|AV635099.1|AV635099
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|14238851|gb|BG857667.1|BG857667
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|16072620|gb|BI874616.1|BI874616
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|49461504|gb|BP089417.1|BP089417
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|49460782|gb|BP088695.1|BP088695
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|22062219|gb|BQ814682.1|BQ814682
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10780745|gb|AV637425.1|AV637425
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10775493|gb|AV632173.1|AV632173
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|10779846|gb|AV636526.1|AV636526
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
EST: gi|22060919|gb|BQ813960.1|BQ813960
EST:     GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAG                         GTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC
genomic: GCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgca ... gccactgcagGTGGGGTTGAGCATCGCCATCATCATCATCGTGGCAATCCACCTTCAGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGCTTCTTCGCATTTAACTGTCGCCGCAAGTCACCAAGGATGGGTTGCTGCACTACGATATGCAAAAATTTGTTTCTCGGGTTTGTTGGCCTATGCAAGgtgcggcgcattggaacacgagcgttggagcgcagggtgttgcgagtaccggagcgtcgattggacgacaagcgtcttaagcgtgctattcgatgctggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacga
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagcgt