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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgctcgtttcccctcgcccttccgcatgccgcccgctcgcctggtgtgccgccaccgccccgcccaccgtcgctgtctactgccgtgcgggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04585
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22067867|gb|BQ817882.1|BQ817882
EST:     CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCG                         GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGA
genomic: CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGA
EST: gi|14236668|gb|BG855484.1|BG855484
EST:     CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCG                         GTGCTGGCCTTCCTCGCCGNCATCATCTCCCTGGCTGAC
genomic: CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
EST: gi|14236732|gb|BG855548.1|BG855548
EST:     CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGNGTGATCTCG                         GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
genomic: CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
EST: gi|15691859|gb|BI716164.1|BI716164
EST:     CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGAGTGATCTCG                         GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
genomic: CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
EST: gi|8932943|gb|BE227704.1|BE227704
EST:     CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCG                         GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
genomic: CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
EST: gi|22054649|gb|BQ811450.1|BQ811450
EST:     GCAGGAGAACTGGCGCACCTCGGTGCCCGTCAT-TCCTGGGGGAANCTCG                         GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
genomic: GCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGAT-CTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
EST: gi|16073013|gb|BI875009.1|BI875009
EST:     CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCG                         GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
genomic: CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
EST: gi|14238850|gb|BG857666.1|BG857666
EST:     CTGGGTGATCTCG                         GTGNTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
genomic: CTGGGTGATCTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
EST: gi|16073011|gb|BI875007.1|BI875007
EST:     CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGNGTGATCTCG                         GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
genomic: CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
EST: gi|14238851|gb|BG857667.1|BG857667
EST:     CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCG                         GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
genomic: CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
EST: gi|16072620|gb|BI874616.1|BI874616
EST:     CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCG                         GTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC
genomic: CGCAGGAGAACTGGCGCACCTCGGTGCCCGTCATCTCCTGGGTGATCTCGgtacgttgct ... gggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attgctcgtttcccctcgcccttccgcatgccgcccgctcgcctggtgtgccgccaccgccccgcccaccgtcgctgtctactgccgtgcgggtgcgcagGTGCTGGCCTTCCTCGCCGCCATCATCTCCCTGGCTGAC

- - - - - - - - - - - - -gcatgcc
- - - - - - - - - - - - - - - - - - - - - -tggtgtg