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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctgcggcttatgcaccagcgcgttcgtgggctgcaagcggtgtacgaaagcacgtcggtagtgtcggcgcaccgccgcgtaccatgaagcacg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04562
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15368441|gb|BI527867.1|BI527867
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
EST: gi|14236886|gb|BG855702.1|BG855702
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
EST: gi|16072025|gb|BI874037.1|BI874037
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
EST: gi|22059383|gb|BQ813401.1|BQ813401
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
EST: gi|22050362|gb|BQ809204.1|BQ809204
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
EST: gi|22069105|gb|BQ818790.1|BQ818790
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
EST: gi|23362353|gb|BU650157.1|BU650157
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
EST: gi|16428853|gb|BI994079.1|BI994079
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
EST: gi|22050360|gb|BQ809203.1|BQ809203
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
EST: gi|16072947|gb|BI874943.1|BI874943
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTG
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTG
EST: gi|15697918|gb|BI722223.1|BI722223
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
EST: gi|15703454|gb|BI727759.1|BI727759
EST:     ACGAGGCGAACGACACGGGATCCGCGTGGCGCTNTGAGACCCTCCCAGAG                         GGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC
genomic: ACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctg ... tgctgcacagGGCGTGCGGCAAGTGCTTCCGCGCGAGAAGCGCTTCTTCTGGCTGGCCTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAGgtgcgtgctgcggcttatgcaccagcgcgttcgtgggctgcaagcggtgtacgaaagcacgtcggtagtgtcggcgcaccgccgcgtaccatgaagcacg

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