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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggaatcccctgtacaaggaccccgatgtgctcggggccccgcatcggagcgtcaactccgcgcttgactcgcttccttctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTTGTGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04562
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15368441|gb|BI527867.1|BI527867
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|14236886|gb|BG855702.1|BG855702
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|22076401|gb|BQ825177.1|BQ825177
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|16072025|gb|BI874037.1|BI874037
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|22059383|gb|BQ813401.1|BQ813401
EST:     CGCCAGCTCCGTCGCTC-ACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|22050362|gb|BQ809204.1|BQ809204
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|23362353|gb|BU650157.1|BU650157
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|16428853|gb|BI994079.1|BI994079
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|22050360|gb|BQ809203.1|BQ809203
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|16072947|gb|BI874943.1|BI874943
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|15697918|gb|BI722223.1|BI722223
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|15703454|gb|BI727759.1|BI727759
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggccccgcatcggagcgtcaactccgcgcttgactcgcttccttctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTTGTGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGG
                            gcttgac  putative branch site (score: 4)
                                  ctcgcttccttctc  CT-rich tract