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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTTGTGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgggttcgtgcgtgtgcccgcttgccacctgccccgcgacacctggcgcgcacctgctactccatggctagactgacaaatcaacatacaagt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04562
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15368441|gb|BI527867.1|BI527867
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|14236886|gb|BG855702.1|BG855702
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|22076401|gb|BQ825177.1|BQ825177
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCCTAGTGGGGCTGCGTTGGTGGAACGA
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGC-TAGTGGGGCTGCGTTGGTGGAACGA
EST: gi|16072025|gb|BI874037.1|BI874037
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|22059383|gb|BQ813401.1|BQ813401
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|22050362|gb|BQ809204.1|BQ809204
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|22069105|gb|BQ818790.1|BQ818790
EST:     GGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: GGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|23362353|gb|BU650157.1|BU650157
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|16428853|gb|BI994079.1|BI994079
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|22050360|gb|BQ809203.1|BQ809203
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|16072947|gb|BI874943.1|BI874943
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|15697918|gb|BI722223.1|BI722223
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: gi|15703454|gb|BI727759.1|BI727759
EST:     TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG                         ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTTGTGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgggttcgtgcgtgtgcccgcttgccacctgccccgcgacacctggcgcgcacctgctactccatggctagactgacaaatcaacatacaagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acataca