1 5' 3' | 2 5' 3' | 3 5' 3' |
...aggaagggcagcgggaaaaactgcgcttatgcgcagcgtggctccctaactggcttgcagcccaccagcttcactgggattcctcctgttgcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG
species | Chlamydomonas reinhardtii |
transcript | EDP04562 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|14236886|gb|BG855702.1|BG855702
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|22076401|gb|BQ825177.1|BQ825177
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCCTAGTGGGGCTGCGTTGGTGGAACGAEST: gi|16072025|gb|BI874037.1|BI874037
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGC-TAGTGGGGCTGCGTTGGTGGAACGA
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|22059383|gb|BQ813401.1|BQ813401
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|22050362|gb|BQ809204.1|BQ809204
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|22069105|gb|BQ818790.1|BQ818790
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: GGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|23362353|gb|BU650157.1|BU650157
genomic: GGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|16428853|gb|BI994079.1|BI994079
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|22050360|gb|BQ809203.1|BQ809203
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|16072947|gb|BI874943.1|BI874943
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|15697918|gb|BI722223.1|BI722223
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGEST: gi|15703454|gb|BI727759.1|BI727759
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
EST: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTG ACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
genomic: TGGTCAACTTCGTCGTGTGCATCGTCCTCTTAGCACTGGACTTCTGGGTGgtgagcctgg ... gcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAG
ctaactggcttgcagcccaccagcttcactgggattcctcctgttgcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG
ccctaac putative branch site (score: 2)
ttcctcctgttgcccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggaagggcagcgggaaaaactgcgcttatgcgcagcgtggctccctaactggcttgcagcccaccagcttcactgggattcctcctgttgcccctgcagACCAAGAACATCACGGGTCGGCTGCTAGTGGGGCTGCGTTGGTGGAACGAGGCGAACGACACGGGATCCGCGTGGCGCTTTGAGACCCTCCCAGAG
- - - - - - - -aaaaact
- - - - - - - - - - - - - - atgcgca
- - - - - - - - - - - - - - - - - - - - - - - - - tggcttg