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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCGCGATGGCCACCCCAAACCCGGACGGAGCTTTGCCGGGTGCAGGTCCGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatcccctgtacaaggaccccgatgtgctcggggccccgcatcggagcgtcaactccgcgcttgactcgcttccttctcggcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04562
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15368441|gb|BI527867.1|BI527867
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|14236886|gb|BG855702.1|BG855702
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|22076401|gb|BQ825177.1|BQ825177
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|16072025|gb|BI874037.1|BI874037
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|22059383|gb|BQ813401.1|BQ813401
EST:     CGCCAGCTCCGTCGCTC-ACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|22050362|gb|BQ809204.1|BQ809204
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|23362353|gb|BU650157.1|BU650157
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|16428853|gb|BI994079.1|BI994079
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|22050360|gb|BQ809203.1|BQ809203
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|16072947|gb|BI874943.1|BI874943
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|15697918|gb|BI722223.1|BI722223
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
EST: gi|15703454|gb|BI727759.1|BI727759
EST:     CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAG                         GTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT
genomic: CGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatc ... ctcggcgcagGTCGTCGCAATTGTGTGGTACTGGATTTGCACGATTGTCAGCAACTCGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGCGCGATGGCCACCCCAAACCCGGACGGAGCTTTGCCGGGTGCAGGTCCGCCAGCTCCGTCGCACAACATAGCAGTGTTCTTCCATGGCTTTTTCAAGgtgaggaatcccctgtacaaggaccccgatgtgctcggggccccgcatcggagcgtcaactccgcgcttgactcgcttccttctcggcgcag

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