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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagactagccatgttgcttatgccgtatccagatgatggtgtatttgctatcagctttagcacagaagcaaggggatgacgtgacggccgttatgcccccatgctgtgggactgttccgttgcggagcagGTCAGCCAGGGCTGTGCCTACCTGGAGGCCGCGCTACAGACCCTGGAGGGCGCCGGGGAGCCTGCACTTGCGCCTACCCTGGCCGCTGAGATTCGTGCTA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04476
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14238602|gb|BG857418.1|BG857418
EST:     TGGCGCTCGCCAACTGCTACCTGGCCGGCAACTGCTTGGAGGAGGGACAG                         GTCAGCCAGGGCTGTGCCTACCTGGAGGCCGCGCTACAGACCCTGGAGGGC
genomic: TGGCGCTCGCCAACTGCTACCTGGCCGGCAACTGCTTGGAGGAGGGACAGgtgagactag ... tgcggagcagGTCAGCCAGGGCTGTGCCTACCTGGAGGCCGCGCTACAGACCCTGGAGGGC
EST: gi|14239885|gb|BG858685.1|BG858685
EST:     TGGCGCTCGCCAACTGCTACCTGGCCGGCAACTGCTTGGAGGAGGGACAG                         GTCAGCCAGNGCTGTGCCTACCTGGAGGCCGCGCTACAGACCCTGGAGGGC
genomic: TGGCGCTCGCCAACTGCTACCTGGCCGGCAACTGCTTGGAGGAGGGACAGgtgagactag ... tgcggagcagGTCAGCCAGGGCTGTGCCTACCTGGAGGCCGCGCTACAGACCCTGGAGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgacgtgacggccgttatgcccccatgctgtgggactgttccgttgcggagcagGTCAGCCAGGGCTGTGCCTACCTGGAGGCCGCGCTACAGACCCTGGAGGGCGCCGGGGAGCCTGCACTTGCGCCTACCCTGGCCGCTGAGATTCGTGCTA
                                       ttccgtt  CT-rich tract