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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCAGATGGCGGGTGGCTTTGCGCTGGTGGCAGCGTTCGCTGTCGGCTTGATGACACCGCCTGGGCAGCGCCTGATCGGGCGGGGGGAGAGTGTCCAGgtgtgtgcctgtgagggggtgtgctcgcacgcacgcttgtggtcttgcagaagtacacagtgccagaactttttgtggttttagcttaacactttgtggtggcgccgctgtgtgcttgtag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04476
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23359702|gb|BU647522.1|BU647522
EST:     TGATGACACCGCCTGGGCAGCGCCTGATCGGGCGGGGGGAGAGTGTCCAG                         GCGGCGCTGATGCGGCAGCGGTCCACGCTGGTGCCGTGCACCGTGGCAGTT
genomic: TGATGACACCGCCTGGGCAGCGCCTGATCGGGCGGGGGGAGAGTGTCCAGgtgtgtgcct ... gtgcttgtagGCGGCGCTGATGCGGCAGCGGTCCACGCTGGTGCCGTGCACCGTGGCAGTT
EST: gi|23360389|gb|BU648209.1|BU648209
EST:     TGATGACACCGCCTGGGCAGCGCCTGATCGGGCGGGGGGAGAGTGTCCAG                         GCGGCGCTGATGCGGCAGCGGTCCACGCTGGTGCCGTGCACCGTGGCAGTT
genomic: TGATGACACCGCCTGGGCAGCGCCTGATCGGGCGGGGGGAGAGTGTCCAGgtgtgtgcct ... gtgcttgtagGCGGCGCTGATGCGGCAGCGGTCCACGCTGGTGCCGTGCACCGTGGCAGTT
EST: gi|23360466|gb|BU648286.1|BU648286
EST:     TGATGACACCGCCTGGGCAGCGCCTGATCGGGCGGGGGGAGAGTGTCCAG                         GCGGCGCTGATGCGGCAGCGGTCCACGCTGGTGCCGTGCACCGTGGCAGTT
genomic: TGATGACACCGCCTGGGCAGCGCCTGATCGGGCGGGGGGAGAGTGTCCAGgtgtgtgcct ... gtgcttgtagGCGGCGCTGATGCGGCAGCGGTCCACGCTGGTGCCGTGCACCGTGGCAGTT