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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttcaggagcgttgtcttggtagtgagcaggtgcatggcataccgtcagcgctttaatcccaactcactcacaatctgctcccgtccatttggtttggcacgtcaaactcagGTGGCCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCCCAGCATCCTCGCGGAGCCGCTTCTGAGCGAGACGCTCGACAAGTTGTCCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04476
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23364072|gb|BU651892.1|BU651892
EST:     TTGAGGACTTCGATGCAATCGCGGCGCGCGGTATGCTGGAGCAGTGGCAG                         GTGGCCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCCC
genomic: TTGAGGACTTCGATGCAATCGCGGCGCGCGGTATGCTGGAGCAGTGGCAGgtgggttcag ... tcaaactcagGTGGCCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCCC
EST: gi|14239884|gb|BG858684.1|BG858684
EST:     ATGCAATCGCGGCGCGCGGGTATGCTGGACCAGTGGCAG                         GTGGNCCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCC
genomic: ATGCAATCGCGGCGCGC-GGTATGCTGGAGCAGTGGCAGgtgggttcag ... tcaaactcagGTGG-CCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCC
EST: gi|23359702|gb|BU647522.1|BU647522
EST:     TTGAGGACTTCGATGCAATCGCGGCGCGCGGTATGCTGGAGCAGTGGCAG                         GTGGCCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCCC
genomic: TTGAGGACTTCGATGCAATCGCGGCGCGCGGTATGCTGGAGCAGTGGCAGgtgggttcag ... tcaaactcagGTGGCCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCCC
EST: gi|23360389|gb|BU648209.1|BU648209
EST:     TTGAGGACTTCGATGCAATCGCGGCGCGCGGTATGCTGGAGCAGTGGCAG                         GTGGCCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCCC
genomic: TTGAGGACTTCGATGCAATCGCGGCGCGCGGTATGCTGGAGCAGTGGCAGgtgggttcag ... tcaaactcagGTGGCCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccaactcactcacaatctgctcccgtccatttggtttggcacgtcaaactcagGTGGCCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCCCAGCATCCTCGCGGAGCCGCTTCTGAGCGAGACGCTCGACAAGTTGTCCA
        cactcac  putative branch site (score: 2)