1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtgcagcggttgtcgccttgaagtctcagccgtcgcccccactgaccatcgtggatggggtcttgcatgttggcggcccaccgacggtcccaatcatgctgtaactgaacccaatcctttccccagTCTGGAGGTGCTCGACTACGCGCGCCGTGACATCATCAACAGCAAGGGCCGCGTACGGGATGTGAACGACATGGACATCCCTGCGGACCTGCTGCCCGGT
species | Chlamydomonas reinhardtii |
transcript | EDP04476 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCACCACAGCTGTGCAGTCAGAGTACAGCTATGTGACGGTCAATGCCCG TCTGGAGGTGCTCGACTACGCGCGCCEST: gi|10792282|gb|AV629648.1|AV629648
genomic: GTCACCACAGCTGTGCAGTCAGAGTACAGCTATGTGACGGTCAATGCCCGgtaagtgcag ... ctttccccagTCTGGAGGTGCTCGACTACGCGCGCC
EST: GTCACCACAGCTGTGCAGTCAGAGTACAGCTATGTGACGGTCAATGCCCG TCTGGAGGTGCTCGACTACGCGCGCCGTGACATCATCAACAGCAAGGGCCGEST: gi|14238602|gb|BG857418.1|BG857418
genomic: GTCACCACAGCTGTGCAGTCAGAGTACAGCTATGTGACGGTCAATGCCCGgtaagtgcag ... ctttccccagTCTGGAGGTGCTCGACTACGCGCGCCGTGACATCATCAACAGCAAGGGCCG
EST: GTCACCACAGCTGTGCAGTCAGAGTACAGCTATGTGACGGTCAATGCCCG TCTGGAGGTGCTCGACTACGCGCGCCGTGACATCATCAACAGCAAGGGCCGEST: gi|14239885|gb|BG858685.1|BG858685
genomic: GTCACCACAGCTGTGCAGTCAGAGTACAGCTATGTGACGGTCAATGCCCGgtaagtgcag ... ctttccccagTCTGGAGGTGCTCGACTACGCGCGCCGTGACATCATCAACAGCAAGGGCCG
EST: GTCACCACAGCTGTGCAGTCAGAGTACAGCTATGTGACGGTCAATGCCCG TCTGGAGGTGCTCGACTACGCGCGCCGTGACATCATCAACAGCAAGGGCCG
genomic: GTCACCACAGCTGTGCAGTCAGAGTACAGCTATGTGACGGTCAATGCCCGgtaagtgcag ... ctttccccagTCTGGAGGTGCTCGACTACGCGCGCCGTGACATCATCAACAGCAAGGGCCG
ggcggcccaccgacggtcccaatcatgctgtaactgaacccaatcctttccccagTCTGGAGGTGCTCGACTACGCGCGCCGTGACATCATCAACAGCAAGGGCCGCGTACGGGATGTGAACGACATGGACATCCCTGCGGACCTGCTGCCCGGT
ctgtaac putative branch site (score: 3)
cccaatcctttcccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcagcggttgtcgccttgaagtctcagccgtcgcccccactgaccatcgtggatggggtcttgcatgttggcggcccaccgacggtcccaatcatgctgtaactgaacccaatcctttccccagTCTGGAGGTGCTCGACTACGCGCGCCGTGACATCATCAACAGCAAGGGCCGCGTACGGGATGTGAACGACATGGACATCCCTGCGGACCTGCTGCCCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC