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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtcgctctacctgccgtgcttgcaacctgcagttaccagaccgtgccgtgccatgcgtcaatcacccatgctgcccgcgatgggcacataccgtgcagctagtgacgccacacctttgcacacattgctcctgcacccccacctggtccctgcccacacccagCTACGAGGCTTTCTACAACTGGTTGAACACGCCCCACTGCGACGCCGGTCACAAGGGTACCCCCAACATCTGGGGCATCGTGCCACCCAAGTAATTGATG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04474
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15704570|gb|BI728875.1|BI728875
EST:     GCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTA                         CTACGAGGCTTTCTACAACTGGTTGAACACGCCCCACTGCGACGCCGGTCA
genomic: GCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTAgtgagtgtcg ... ccacacccagCTACGAGGCTTTCTACAACTGGTTGAACACGCCCCACTGCGACGCCGGTCA
EST: gi|161815169|gb|FC105314.1|FC105314
EST:     TTTCACGAGCTGGATGTCAACAAGAACGGCGTCATTTCCCGCCAGGAGTA                         CTACGAGGCCTTCTACAACTGGTTGAACACGCCCCACTGCGACGCCAGTCA
genomic: TTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTAgtgagtgtcg ... ccacacccagCTACGAGGCTTTCTACAACTGGTTGAACACGCCCCACTGCGACGCCGGTCA
EST: gi|161811907|gb|FC096097.1|FC096097
EST:     TTTCACGAGCTGGATGTCAACAAGAACGGCGTCATTTCCCGCCAGGAGTA                         CTACGAGGCCTTCTACAACTGGTTGAACACGCCCCACTGCGAC
genomic: TTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTAgtgagtgtcg ... ccacacccagCTACGAGGCTTTCTACAACTGGTTGAACACGCCCCACTGCGAC
EST: gi|161821457|gb|FC109752.1|FC109752
EST:     TTTCACGAGCTGGATGTCAACAAGAACGGCGTCATTTCCCGCCAGGAGTA                         CTACGAGGCCTTCTACAACTGGTTGAACACGCCCCACTGCGACGCCAGTCA
genomic: TTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTAgtgagtgtcg ... ccacacccagCTACGAGGCTTTCTACAACTGGTTGAACACGCCCCACTGCGACGCCGGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacctttgcacacattgctcctgcacccccacctggtccctgcccacacccagCTACGAGGCTTTCTACAACTGGTTGAACACGCCCCACTGCGACGCCGGTCACAAGGGTACCCCCAACATCTGGGGCATCGTGCCACCCAAGTAATTGATG
                                      tccctgccc  CT-rich tract