Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTCAACGTCTGTGATTACGACAAGgtgagtcaacagcggcaggaggcagcgcgagcccctaccccacctgcccgacttccgtagtgctgttgatcctgcgtttggccctgcgcttaccgcgctatcgagcgctacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04474
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15367980|gb|BI527406.1|BI527406
EST:     CACTTCAACGTCTGTGATTACGACAAG                         GACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
genomic: CACTTCAACGTCTGTGATTACGACAAGgtgagtcaac ... agcgctacagGACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
EST: gi|49464106|gb|BP092019.1|BP092019
EST:     CACTTCAACGTCTGTGATTACGACAAG                         GACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
genomic: CACTTCAACGTCTGTGATTACGACAAGgtgagtcaac ... agcgctacagGACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
EST: gi|161815169|gb|FC105314.1|FC105314
EST:     CACTTCAACGTTTGTGATTACGACAAG                         GACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
genomic: CACTTCAACGTCTGTGATTACGACAAGgtgagtcaac ... agcgctacagGACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
EST: gi|161811907|gb|FC096097.1|FC096097
EST:     CACTTCAACGTTTGTGATTACGACAAG                         GACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
genomic: CACTTCAACGTCTGTGATTACGACAAGgtgagtcaac ... agcgctacagGACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
EST: gi|14229438|gb|BG848254.1|BG848254
EST:     CACTTCAACGTCTGTGATTACGACAAG                         GACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
genomic: CACTTCAACGTCTGTGATTACGACAAGgtgagtcaac ... agcgctacagGACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
EST: gi|15701172|gb|BI725477.1|BI725477
EST:     CACTTCAACGTCTGTGATTACGACAAG                         GACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
genomic: CACTTCAACGTCTGTGATTACGACAAGgtgagtcaac ... agcgctacagGACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
EST: gi|161821457|gb|FC109752.1|FC109752
EST:     CACTTCAACGTTTGTGATTACGACAAG                         GACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC
genomic: CACTTCAACGTCTGTGATTACGACAAGgtgagtcaac ... agcgctacagGACGGCGTCGTGCGCTGGAATGACATCATGCAGATCGTGGACAACTACGCC