1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aggtgggtgcttgctcacctgtgtgatgagcaatacggtaccgcggtgtgaagtgctggcaccgagtaccaaggttgctcgcttttgtgcacgggcaggtCTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTA
species | Chlamydomonas reinhardtii |
transcript | EDP04474 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGT CTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATTTCCCGCCAGGAGTAEST: gi|161811907|gb|FC096097.1|FC096097
genomic: AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGTgtgtcacggg ... acgggcaggtCTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTA
EST: AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGT CTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATTTCCCGCCAGGAGTAEST: gi|161821457|gb|FC109752.1|FC109752
genomic: AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGTgtgtcacggg ... acgggcaggtCTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTA
EST: AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGT CTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATTTCCCGCCAGGAGTA
genomic: AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGTgtgtcacggg ... acgggcaggtCTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtgggtgcttgctcacctgtgtgatgagcaatacggtaccgcggtgtgaagtgctggcaccgagtaccaaggttgctcgcttttgtgcacgggcaggtCTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- gtgggtg
- - - - - -tgctcac
- - - - - - - - - -tgtgtga