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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTCAAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGTgtgtcacgggggcgctgatatactgcgtgggcttatccgcaccagtgggctggcaggtctgggctggtgtccaaggttgttgggtgacgccgccagcccc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04474
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161815169|gb|FC105314.1|FC105314
EST:     AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGT                         CTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATTTCCCGCCAGGAGTA
genomic: AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGTgtgtcacggg ... acgggcaggtCTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTA
EST: gi|161811907|gb|FC096097.1|FC096097
EST:     AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGT                         CTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATTTCCCGCCAGGAGTA
genomic: AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGTgtgtcacggg ... acgggcaggtCTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTA
EST: gi|161821457|gb|FC109752.1|FC109752
EST:     AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGT                         CTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATTTCCCGCCAGGAGTA
genomic: AAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGTgtgtcacggg ... acgggcaggtCTTTCACGAGCTGGATGTCAACAAGAACGGCGTCATCTCCCGCCAGGAGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGTTCAAGGAGTACTGGACCGCGCACCAGCTCAAGCCCGCGGACATGAAGCAGGTgtgtcacgggggcgctgatatactgcgtgggcttatccgcaccagtgggctggcaggtctgggctggtgtccaaggttgttgggtgacgccgccagcccc

- - - AAGGAG
- - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtga