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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCGTGCAGTGGCGCAAGTTCGGTCTGCTGATGTACTACTACTGGCATCGCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTACgtgagtcgtgcggcggatgggggctcgggcccgcgtgcttgcggtgcacctgggatcaaatcaacagctgtgctctacaggaaggtcggcaagcccacaaagttgacgtgccttacctcgttcgctatcatgatccccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04436
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161810717|gb|FC098495.1|FC098495
EST:     GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTAC                         GGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCACG-GC
genomic: GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTACgtgagtcgtg ... atccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCA-GCGC
EST: gi|161811059|gb|FC095288.1|FC095288
EST:     GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTAC                         GGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCA-CGGC
genomic: GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTACgtgagtcgtg ... atccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCAGCG-C
EST: gi|161802464|gb|FC091014.1|FC091014
EST:     TCGCCTTCTAC                         GGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCACG-GC
genomic: TCGCCTTCTACgtgagtcgtg ... atccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCA-GCGC
EST: gi|161809214|gb|FC095244.1|FC095244
EST:     GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTAC                         GGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCACG-GC
genomic: GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTACgtgagtcgtg ... atccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCA-GCGC