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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTGGGCTTCTTCGCTGACCGCATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTGgtgagtcacgcttggggtcagggtctcaccctcgccgcacgacgcgcttctgggacgctctaaatctcctgcctacatgcctgacctgcagcttgccttcagcacttaactcccttttgtcctgaccccttgaaatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04436
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785423|gb|AV642095.1|AV642095
EST:     CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTG                         GTGCCATCCTGATTATCTCCTCTGGCCG-ACCCACCGAGAACG
genomic: CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTGgtgagtcacg ... tgaaatgcagGTGCCATCCTGATTATCTCCTCTG-CCGGACCCACCGAGAACG
EST: gi|14227718|gb|BG846534.1|BG846534
EST:     CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTG                         GTGCCATCCTGATTATCTCCTCTGCCGGACCCACCGAGAACGCCCTTTGGG
genomic: CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTGgtgagtcacg ... tgaaatgcagGTGCCATCCTGATTATCTCCTCTGCCGGACCCACCGAGAACGCCCTTTGGG
EST: gi|15700841|gb|BI725146.1|BI725146
EST:     CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTG                         GTGCCATCCTGATTATCTCCTCTGCCGGACCCACCGAGAACGCCCTTTGGG
genomic: CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTGgtgagtcacg ... tgaaatgcagGTGCCATCCTGATTATCTCCTCTGCCGGACCCACCGAGAACGCCCTTTGGG
EST: gi|15700843|gb|BI725148.1|BI725148
EST:     CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTG                         GTGCCATCCTGA
genomic: CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTGgtgagtcacg ... tgaaatgcagGTGCCATCCTGA
EST: gi|10787575|gb|AV644247.1|AV644247
EST:     CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTG                         GTGCCATCCTGATTATCTCCTCTGCC
genomic: CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTGgtgagtcacg ... tgaaatgcagGTGCCATCCTGATTATCTCCTCTGCC
EST: gi|15700842|gb|BI725147.1|BI725147
EST:     CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTG                         GTGCCATCCTG
genomic: CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTGgtgagtcacg ... tgaaatgcagGTGCCATCCTG
EST: gi|10783422|gb|AV640094.1|AV640094
EST:     CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTG                         GTGCCATCCTGATTATCTCCTCTGCCGGACCCACCGAGAACGCCCTTTG
genomic: CATCGGCCGCAAATGGGGCAGTGTCGCCACCGCCGGCACCATGGTCGTTGgtgagtcacg ... tgaaatgcagGTGCCATCCTGATTATCTCCTCTGCCGGACCCACCGAGAACGCCCTTTG