1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtcgtgcggcggatgggggctcgggcccgcgtgcttgcggtgcacctgggatcaaatcaacagctgtgctctacaggaaggtcggcaagcccacaaagttgacgtgccttacctcgttcgctatcatgatccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCAGCGCCTCGCTAATCCAAGTCCTGGAGTGGACTCTGCTGAACAGCTCTGTGGCTC
species | Chlamydomonas reinhardtii |
transcript | EDP04436 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTAC GGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCACG-GCEST: gi|161811059|gb|FC095288.1|FC095288
genomic: GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTACgtgagtcgtg ... atccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCA-GCGC
EST: GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTAC GGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCA-CGGCEST: gi|161802464|gb|FC091014.1|FC091014
genomic: GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTACgtgagtcgtg ... atccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCAGCG-C
EST: TCGCCTTCTAC GGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCACG-GCEST: gi|161809214|gb|FC095244.1|FC095244
genomic: TCGCCTTCTACgtgagtcgtg ... atccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCA-GCGC
EST: GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTAC GGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCACG-GC
genomic: GCAATTTCGGCACCGCCATGAGCTGGTTCGTGTGGGACTTCGCCTTCTACgtgagtcgtg ... atccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCA-GCGC
ggcaagcccacaaagttgacgtgccttacctcgttcgctatcatgatccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCAGCGCCTCGCTAATCCAAGTCCTGGAGTGGACTCTGCTGAACAGCTCTGTGGCTC
gccttac putative branch site (score: 3)
tccccac putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcgtgcggcggatgggggctcgggcccgcgtgcttgcggtgcacctgggatcaaatcaacagctgtgctctacaggaaggtcggcaagcccacaaagttgacgtgccttacctcgttcgctatcatgatccccacagGGTAACAAGCTGTTCCAGGGCACCTTCATCAAGATCATCAACCCCAGCGCCTCGCTAATCCAAGTCCTGGAGTGGACTCTGCTGAACAGCTCTGTGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC