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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTCGGCCTTGTGGACGGCCGCACCAAGTTCTGGATCAGCGCTTTCTGCGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCGgtgagttgttgtttccaaggtcggccgcgcatgtctcgcgcttgcatgtctgttgcccttgattgttccttcgcgccaggcactcggtgcgttacccacaaccgcatcctcctcctttctttcccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04436
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161794609|gb|FC081991.1|FC081991
EST:     CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCG                         GCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
genomic: CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCGgtgagttgtt ... tttcccacagGCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
EST: gi|161810717|gb|FC098495.1|FC098495
EST:     CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCG                         GCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
genomic: CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCGgtgagttgtt ... tttcccacagGCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
EST: gi|161811059|gb|FC095288.1|FC095288
EST:     CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCG                         GCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
genomic: CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCGgtgagttgtt ... tttcccacagGCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
EST: gi|161813320|gb|FC101463.1|FC101463
EST:     CCTGATCACCATCCCCGATGTGACCG                         GCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
genomic: CCTGATCACCATCCCCGATGTGACCGgtgagttgtt ... tttcccacagGCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
EST: gi|161792246|gb|FC080330.1|FC080330
EST:     CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCG                         GCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
genomic: CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCGgtgagttgtt ... tttcccacagGCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
EST: gi|161802464|gb|FC091014.1|FC091014
EST:     CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCG                         GCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
genomic: CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCGgtgagttgtt ... tttcccacagGCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
EST: gi|161809214|gb|FC095244.1|FC095244
EST:     CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCG                         GCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
genomic: CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCGgtgagttgtt ... tttcccacagGCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
EST: gi|161817805|gb|FC100016.1|FC100016
EST:     CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCG                         GCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC
genomic: CGGTCTGGCCGGTGTGATCCTGACCCTGATCACCATCCCCGATGTGACCGgtgagttgtt ... tttcccacagGCCTGGACCTGCGCGAGGGTGACAAGCGCTGGCTGGCCATCCTCGACGGAC