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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgcctcaggcgtgtgcttgtgcggatgacgccacactcacaagctatcgtacatacgcttgcatgaacccaacggcacccaacccaacccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCCTCGTTCGGCGAGCGCTACCTGTCGTCGGTGCTGTTCCAGCAGCTGCGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04425
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23366664|gb|BU654483.1|BU654483
EST:     GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAG                         GTGGCCAGCCGCCCTGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
genomic: GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAGgtgcgggggc ... ccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
EST: gi|14226587|gb|BG845419.1|BG845419
EST:     GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAG                         GTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
genomic: GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAGgtgcgggggc ... ccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
EST: gi|23366823|gb|BU654642.1|BU654642
EST:     GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAG                         GTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
genomic: GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAGgtgcgggggc ... ccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
EST: gi|23366663|gb|BU654482.1|BU654482
EST:     GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAG                         GTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
genomic: GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAGgtgcgggggc ... ccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
EST: gi|22070938|gb|BQ820276.1|BQ820276
EST:     GTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAG                         GTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
genomic: GTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAGgtgcgggggc ... ccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
EST: gi|14237450|gb|BG856266.1|BG856266
EST:     GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAG                         GTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
genomic: GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAGgtgcgggggc ... ccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
EST: gi|14235563|gb|BG854379.1|BG854379
EST:     CCTCATGGTGGGCATCAGCTCGG-CGGCCGCGGTGCAGGCCGCCATCAAG                         GTGGCCAGCCGCCCCGAGAACGAGGGCAAGCT
genomic: CCTCATGGTGGGCATCAGCTCGGGCG-CCGCGGTGCAGGCCGCCATCAAGgtgcgggggc ... ccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCT
EST: gi|9028231|gb|BE238271.1|BE238271
EST:     GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAG                         GTGGCCAGCCGCCCCGAAAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
genomic: GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAGgtgcgggggc ... ccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
EST: gi|7615327|gb|AW720774.1|AW720774
EST:     GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAG                         GTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC
genomic: GCCTCATGGTGGGCATCAGCTCGGGCGCCGCGGTGCAGGCCGCCATCAAGgtgcgggggc ... ccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgcctcaggcgtgtgcttgtgcggatgacgccacactcacaagctatcgtacatacgcttgcatgaacccaacggcacccaacccaacccggccgcagGTGGCCAGCCGCCCCGAGAACGAGGGCAAGCTGGTGGTGGTGGTGCTGCCCTCGTTCGGCGAGCGCTACCTGTCGTCGGTGCTGTTCCAGCAGCTGCGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC