1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cggctatcaagtttgtgggtgtcagtgccgcaagtctctcgcccttgggcttggtgctctttcttaacctcgcgctctcgcccgccggcccgtgcgtcagGCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGAAGAAGTCGGACGTGCAGCTGGTGGCTGTGGAGCCGGCCGAGAGCCCCGT
species | Chlamydomonas reinhardtii |
transcript | EDP04425 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGG GCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGAEST: gi|10772916|gb|AV623739.1|AV623739
genomic: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGGgtgagctcgc ... cgtgcgtcagGCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGA
EST: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGG GCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGAEST: gi|22056000|gb|BQ812146.1|BQ812146
genomic: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGGgtgagctcgc ... cgtgcgtcagGCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGA
EST: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGG GCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGAEST: gi|14235562|gb|BG854378.1|BG854378
genomic: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGGgtgagctcgc ... cgtgcgtcagGCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGA
EST: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGG GCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGAEST: gi|14226588|gb|BG845420.1|BG845420
genomic: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGGgtgagctcgc ... cgtgcgtcagGCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGA
EST: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTTGG GCGTGGGCACCTGTCG-CACCAT-ACCGGGACCGACCGGTACCTGCTCGAGEST: gi|14227106|gb|BG845922.1|BG845922
genomic: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGGgtgagctcgc ... cgtgcgtcagGCGTGGGCACCGG-CGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAG
EST: CCCGAGATCTGGAGCGCCACCGACGGGCA-GGTCGACATCCTGGTGTCGG NNCGTGG-CACCGGCGGCACCATCACCTGCACCGGCCGCTACCTGCGCGAGEST: gi|14235563|gb|BG854379.1|BG854379
genomic: CCCGAGATCTGGAGCGCCACCGACGG-CAAGGTCGACATCCTGGTGTCGGgtgagctcgc ... cgtgcgtcagG-CGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAG
EST: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGG GCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGA
genomic: CCCCGAGATCTGGAGCGCCACCGACGGCAAGGTCGACATCCTGGTGTCGGgtgagctcgc ... cgtgcgtcagGCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGA
tgggcttggtgctctttcttaacctcgcgctctcgcccgccggcccgtgcgtcagGCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGAAGAAGTCGGACGTGCAGCTGGTGGCTGTGGAGCCGGCCGAGAGCCCCGT
tcttaac putative branch site (score: 2)
tttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggctatcaagtttgtgggtgtcagtgccgcaagtctctcgcccttgggcttggtgctctttcttaacctcgcgctctcgcccgccggcccgtgcgtcagGCGTGGGCACCGGCGGCACCATCACCGGCACCGGCCGCTACCTGCGCGAGAAGAAGTCGGACGTGCAGCTGGTGGCTGTGGAGCCGGCCGAGAGCCCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG